Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

t-sne on binary regulon activity #598

Open
robertzeibich opened this issue Jan 9, 2025 · 0 comments
Open

t-sne on binary regulon activity #598

robertzeibich opened this issue Jan 9, 2025 · 0 comments
Labels
question Further information is requested

Comments

@robertzeibich
Copy link

image

I am wondering how plot d was generated.

I was thinking of the following:

#binary_mtx
binary_mtx, auc_thresholds = binarize(auc_mtx, num_workers=24)
adata.obsm['X_aucell_bin'] = np.array(binary_mtx)
sc.tl.tsne(adata, use_rep='X_aucell_bin')
adata.obsm['X_tsne_aucell_bin'] = adata.obsm.pop('X_tsne')

However, I saw that each cell type had the extension GRN.
@robertzeibich robertzeibich added the question Further information is requested label Jan 9, 2025
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
question Further information is requested
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@robertzeibich