AUCell - AttributeError: 'Series' object has no attribute 'iteritems'

[shrutikhare-git]

I get the following error while trying to run AUCell step from the tutorial (http://htmlpreview.github.io/?https://github.com/aertslab/SCENICprotocol/blob/master/notebooks/PBMC10k_SCENIC-protocol-CLI.html)

/home/xx/.local/bin/pyscenic aucell filtered_scenic.loom reg.csv --output pyscenic_output.loom --num_workers 4

2023-05-03 15:40:13,037 - pyscenic.cli.pyscenic - INFO - Loading expression matrix.

2023-05-03 15:40:14,208 - pyscenic.cli.pyscenic - INFO - Loading gene signatures.
Create regulons from a dataframe of enriched features.
Additional columns saved: []

2023-05-03 15:40:14,746 - pyscenic.cli.pyscenic - INFO - Calculating cellular enrichment.

2023-05-03 15:40:22,311 - pyscenic.cli.pyscenic - INFO - Writing results to file.
Traceback (most recent call last):
File "/home/xx/.local/bin/pyscenic", line 8, in
sys.exit(main())
File "/home/xx/.local/lib/python3.10/site-packages/pyscenic/cli/pyscenic.py", line 713, in main
args.func(args)
File "/home/xx/.local/lib/python3.10/site-packages/pyscenic/cli/pyscenic.py", line 296, in aucell_command
append_auc_mtx(
File "/home/xx/.local/lib/python3.10/site-packages/pyscenic/cli/utils.py", line 347, in append_auc_mtx
for name, threshold in auc_thresholds.iteritems()
File "/home/xx/.local/lib/python3.10/site-packages/pandas/core/generic.py", line 5989, in getattr
return object.getattribute(self, name)
AttributeError: 'Series' object has no attribute 'iteritems'

I tried running this from CLI as well as notebook but get the same error

system info -
anndata 0.9.1
scanpy 1.9.3

MulticoreTSNE NA
PIL 9.5.0
asttokens NA
backcall 0.2.0
cffi 1.15.1
cloudpickle 2.2.1
colorama 0.4.6
comm 0.1.3
cycler 0.10.0
cython_runtime NA
cytoolz 0.12.1
dask 2023.4.0
dateutil 2.8.2
debugpy 1.6.7
decorator 5.1.1
defusedxml 0.7.1
executing 1.2.0
h5py 3.8.0
igraph 0.10.4
ipykernel 6.22.0
ipython_genutils 0.2.0
jedi 0.18.2
jinja2 3.1.2
joblib 1.2.0
kiwisolver 1.4.4
llvmlite 0.39.1
loompy 3.0.7
louvain 0.8.0
lz4 4.3.2
markupsafe 2.1.2
matplotlib 3.7.1
mpl_toolkits NA
natsort 8.3.1
nt NA
ntsecuritycon NA
numba 0.56.4
numexpr 2.8.4
numpy 1.23.5
numpy_groupies 0.9.20
packaging 23.1
pandas 2.0.1
parso 0.8.3
pickleshare 0.7.5
pkg_resources NA
platformdirs 3.3.0
prompt_toolkit 3.0.38
psutil 5.9.5
pure_eval 0.2.2
pyarrow 11.0.0
pycparser 2.21
pydev_ipython NA
pydevconsole NA
pydevd 2.9.5
pydevd_file_utils NA
pydevd_plugins NA
pydevd_tracing NA
pygments 2.15.1
pyparsing 3.0.9
pythoncom NA
pytz 2023.3
pywin32_bootstrap NA
pywin32_system32 NA
pywintypes NA
scipy 1.10.1
seaborn 0.12.2
session_info 1.0.0
setuptools 67.7.2
six 1.16.0
sklearn 1.2.2
stack_data 0.6.2
statsmodels 0.13.5
tblib 1.7.0
texttable 1.6.7
threadpoolctl 3.1.0
tlz 0.12.1
toolz 0.12.0
tornado 6.3.1
traitlets 5.9.0
wcwidth 0.2.6
win32api NA
win32com NA
win32security NA
yaml 6.0
zipp NA
zmq 25.0.2
zoneinfo NA

IPython 8.12.0
jupyter_client 8.2.0
jupyter_core 5.3.0
notebook 6.5.4

Python 3.10.10 | packaged by conda-forge | (main, Mar 24 2023, 20:00:38) [MSC v.1934 64 bit (AMD64)]
Windows-10-10.0.19044-SP0

[Dingpw]

I have the same problems with pandas 2.0.3.