This repository describes the analysis performed in the paper Tarone et al. 2022. The devil is in the details: Variable impacts of season, BMI, sampling site temperature, and presence of insects on the post-mortem microbiome
This repository assumes you are running in a Unix environment (e.g., Mac OSX or Linux) and you have conda installed.
To get this repository:
- Install and set up up anaconda or miniconda as described at the bioconda documentation, including setting up channels.
- You should also have QIIME2 installed as a conda environment.
- Clone this repository to your machine and change into the directory with
git clone https://github.com/aemann01/necrobiome.git && cd necrobiome/- Run the following command to install the one of the environments
conda env create -f environment.yml
- To load a given environment run
conda activate 2022-Necrobiome- To turn off the environment run
conda deactivate