Remove timereg comment

adibender · May 27, 2020 · 3b12dbd · 3b12dbd
1 parent d004a56
commit 3b12dbd
Showing 1 changed file with 0 additions and 16 deletions.
diff --git a/tests/testthat/test-cumulative-coefficients.R b/tests/testthat/test-cumulative-coefficients.R
@@ -5,16 +5,6 @@ test_that("Cumulative coefficients work", {
   df <- tumor[1:30, c("days", "status", "age")]
   df$x1 <- as.factor(rep(letters[1:3], each = nrow(df) / 3L))
 
-  ## aalen model
-  # library(timereg)
-  # mod       <- aalen(Surv(days, status) ~ x1 + age, data = df)
-  # cumu_coef_aalen <- get_cumu_coef(
-  #   mod,
-  #   df,
-  #   terms = c("(Intercept)", "x1"))
-  # expect_data_frame(cumu_coef_aalen, nrows = 42L, ncols = 6L)
-  # expect_equal(unique(cumu_coef_aalen$variable), c("(Intercept)", "x1b", "x1c"))
-
   ## pam
   ped <- as_ped(df, formula = Surv(days, status)~ x1 + age)
   pam <- mgcv::gam(ped_status ~ s(tend) + x1 + age, data = ped,
@@ -24,11 +14,5 @@ test_that("Cumulative coefficients work", {
   expect_equal(unique(cumu_coef_pam$variable), c("age", "x1 (b)", "x1 (c)"))
   cumu_coef_pam <- get_cumu_coef(pam, ped, terms = c("(Intercept)", "age"))
   expect_data_frame(cumu_coef_pam, nrows = 24L, ncols = 6L)
-  # ggplot(
-  #   filter(cc2, variable == "(Intercept)"),
-  #   aes(x = time, y = cumu_hazard)) +
-  # geom_step() +
-  # geom_step(data = filter(cumu_coef_aalen, variable == "(Intercept)"), col = 2)
-
 
 })