NAMESPACE

# Generated by roxygen2: do not edit by hand

export("counts<-")
export("interestingGroups<-")
export("organism<-")
export("sampleData<-")
export("sampleNames<-")
export("sizeFactors<-")
export(AcidExperimentTestsUrl)
export(EnsemblToNcbi)
export(GeneToSymbol)
export(NcbiToEnsembl)
export(TxToGene)
export(aggregate)
export(aggregateCols)
export(aggregateRows)
export(as.SummarizedExperiment)
export(autopadZeros)
export(calculateMetrics)
export(camelCase)
export(combine)
export(convertGenesToSymbols)
export(convertSampleIdsToNames)
export(convertSymbolsToGenes)
export(convertTranscriptsToGenes)
export(correlation)
export(counts)
export(decode)
export(detectLanes)
export(dottedCase)
export(droplevels2)
export(encode)
export(estimateSizeFactors)
export(export)
export(geneNames)
export(headtail)
export(humanize)
export(importSampleData)
export(integerCounts)
export(interestingGroups)
export(makeSampleData)
export(makeSummarizedExperiment)
export(mapGenesToIds)
export(mapGenesToRownames)
export(mapGenesToSymbols)
export(matchInterestingGroups)
export(matchSampleColumn)
export(melt)
export(metrics)
export(microplate)
export(minimalSampleData)
export(nonzeroRowsAndCols)
export(organism)
export(sampleData)
export(sampleNames)
export(sanitizeSampleData)
export(selectSamples)
export(sizeFactors)
export(snakeCase)
export(stripGeneVersions)
export(stripTranscriptVersions)
export(tpm)
export(uniteInterestingGroups)
export(upperCamelCase)
exportMethods("counts<-")
exportMethods("interestingGroups<-")
exportMethods("sampleData<-")
exportMethods("sampleNames<-")
exportMethods("sizeFactors<-")
exportMethods(EnsemblToNcbi)
exportMethods(GeneToSymbol)
exportMethods(TxToGene)
exportMethods(aggregate)
exportMethods(aggregateCols)
exportMethods(aggregateRows)
exportMethods(as.SummarizedExperiment)
exportMethods(autopadZeros)
exportMethods(calculateMetrics)
exportMethods(camelCase)
exportMethods(combine)
exportMethods(convertGenesToSymbols)
exportMethods(convertSampleIdsToNames)
exportMethods(convertSymbolsToGenes)
exportMethods(convertTranscriptsToGenes)
exportMethods(correlation)
exportMethods(counts)
exportMethods(decode)
exportMethods(dottedCase)
exportMethods(encode)
exportMethods(estimateSizeFactors)
exportMethods(export)
exportMethods(geneNames)
exportMethods(headtail)
exportMethods(humanize)
exportMethods(integerCounts)
exportMethods(interestingGroups)
exportMethods(makeSampleData)
exportMethods(mapGenesToIds)
exportMethods(mapGenesToRownames)
exportMethods(mapGenesToSymbols)
exportMethods(matchSampleColumn)
exportMethods(melt)
exportMethods(metrics)
exportMethods(nonzeroRowsAndCols)
exportMethods(organism)
exportMethods(sampleData)
exportMethods(sampleNames)
exportMethods(selectSamples)
exportMethods(sizeFactors)
exportMethods(snakeCase)
exportMethods(stripGeneVersions)
exportMethods(stripTranscriptVersions)
exportMethods(tpm)
exportMethods(uniteInterestingGroups)
exportMethods(upperCamelCase)
importClassesFrom(AcidBase,missingOrNULL)
importClassesFrom(AcidGenomes,EnsemblToNcbi)
importClassesFrom(AcidGenomes,GeneToSymbol)
importClassesFrom(AcidGenomes,NcbiToEnsembl)
importClassesFrom(AcidGenomes,TxToGene)
importClassesFrom(IRanges,SplitDFrameList)
importClassesFrom(Matrix,Matrix)
importClassesFrom(S4Vectors,DFrame)
importClassesFrom(S4Vectors,SimpleList)
importClassesFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(AcidBase,geometricMean)
importFrom(AcidBase,initDir)
importFrom(AcidBase,lanePattern)
importFrom(AcidBase,metadataDenylist)
importFrom(AcidBase,methodFunction)
importFrom(AcidBase,realpath)
importFrom(AcidBase,standardizeCall)
importFrom(AcidBase,strMatch)
importFrom(AcidBase,strPad)
importFrom(AcidCLI,abort)
importFrom(AcidCLI,alert)
importFrom(AcidCLI,alertInfo)
importFrom(AcidCLI,alertWarning)
importFrom(AcidCLI,toInlineString)
importFrom(AcidGenerics,"interestingGroups<-")
importFrom(AcidGenerics,"sampleData<-")
importFrom(AcidGenerics,EnsemblToNcbi)
importFrom(AcidGenerics,GeneToSymbol)
importFrom(AcidGenerics,NcbiToEnsembl)
importFrom(AcidGenerics,TxToGene)
importFrom(AcidGenerics,aggregateCols)
importFrom(AcidGenerics,aggregateRows)
importFrom(AcidGenerics,as.SummarizedExperiment)
importFrom(AcidGenerics,atomize)
importFrom(AcidGenerics,autopadZeros)
importFrom(AcidGenerics,calculateMetrics)
importFrom(AcidGenerics,camelCase)
importFrom(AcidGenerics,convertGenesToSymbols)
importFrom(AcidGenerics,convertSampleIdsToNames)
importFrom(AcidGenerics,convertSymbolsToGenes)
importFrom(AcidGenerics,convertTranscriptsToGenes)
importFrom(AcidGenerics,correlation)
importFrom(AcidGenerics,dottedCase)
importFrom(AcidGenerics,droplevels2)
importFrom(AcidGenerics,encode)
importFrom(AcidGenerics,export)
importFrom(AcidGenerics,factorize)
importFrom(AcidGenerics,geneNames)
importFrom(AcidGenerics,headtail)
importFrom(AcidGenerics,humanize)
importFrom(AcidGenerics,import)
importFrom(AcidGenerics,integerCounts)
importFrom(AcidGenerics,interestingGroups)
importFrom(AcidGenerics,leftJoin)
importFrom(AcidGenerics,makeNames)
importFrom(AcidGenerics,makeSampleData)
importFrom(AcidGenerics,mapGenesToIds)
importFrom(AcidGenerics,mapGenesToRownames)
importFrom(AcidGenerics,mapGenesToSymbols)
importFrom(AcidGenerics,matchSampleColumn)
importFrom(AcidGenerics,melt)
importFrom(AcidGenerics,metrics)
importFrom(AcidGenerics,mutateAt)
importFrom(AcidGenerics,nonzeroRowsAndCols)
importFrom(AcidGenerics,removeNa)
importFrom(AcidGenerics,sampleData)
importFrom(AcidGenerics,selectSamples)
importFrom(AcidGenerics,snakeCase)
importFrom(AcidGenerics,stripGeneVersions)
importFrom(AcidGenerics,stripTranscriptVersions)
importFrom(AcidGenerics,tpm)
importFrom(AcidGenerics,uniteInterestingGroups)
importFrom(AcidGenerics,upperCamelCase)
importFrom(AcidGenomes,detectOrganism)
importFrom(AcidGenomes,emptyRanges)
importFrom(Biobase,"sampleNames<-")
importFrom(Biobase,sampleNames)
importFrom(BiocGenerics,"%in%")
importFrom(BiocGenerics,"counts<-")
importFrom(BiocGenerics,"organism<-")
importFrom(BiocGenerics,"sizeFactors<-")
importFrom(BiocGenerics,Map)
importFrom(BiocGenerics,as.data.frame)
importFrom(BiocGenerics,cbind)
importFrom(BiocGenerics,combine)
importFrom(BiocGenerics,counts)
importFrom(BiocGenerics,do.call)
importFrom(BiocGenerics,estimateSizeFactors)
importFrom(BiocGenerics,lapply)
importFrom(BiocGenerics,match)
importFrom(BiocGenerics,organism)
importFrom(BiocGenerics,setdiff)
importFrom(BiocGenerics,sizeFactors)
importFrom(BiocGenerics,t)
importFrom(BiocGenerics,unlist)
importFrom(BiocGenerics,unsplit)
importFrom(GenomicRanges,GRanges)
importFrom(IRanges,SplitDataFrameList)
importFrom(Matrix,colSums)
importFrom(Matrix,rowSums)
importFrom(S4Vectors,"mcols<-")
importFrom(S4Vectors,"metadata<-")
importFrom(S4Vectors,DataFrame)
importFrom(S4Vectors,Rle)
importFrom(S4Vectors,SimpleList)
importFrom(S4Vectors,aggregate)
importFrom(S4Vectors,complete.cases)
importFrom(S4Vectors,cor)
importFrom(S4Vectors,decode)
importFrom(S4Vectors,droplevels)
importFrom(S4Vectors,head)
importFrom(S4Vectors,mcols)
importFrom(S4Vectors,metadata)
importFrom(S4Vectors,na.omit)
importFrom(S4Vectors,split)
importFrom(S4Vectors,summary)
importFrom(SummarizedExperiment,"assay<-")
importFrom(SummarizedExperiment,"assayNames<-")
importFrom(SummarizedExperiment,"assays<-")
importFrom(SummarizedExperiment,"colData<-")
importFrom(SummarizedExperiment,"rowData<-")
importFrom(SummarizedExperiment,"rowRanges<-")
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,assayNames)
importFrom(SummarizedExperiment,assays)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,rowData)
importFrom(SummarizedExperiment,rowRanges)
importFrom(goalie,allAreAtomic)
importFrom(goalie,allAreMatchingRegex)
importFrom(goalie,areDisjointSets)
importFrom(goalie,areIntersectingSets)
importFrom(goalie,areSetEqual)
importFrom(goalie,assert)
importFrom(goalie,bapply)
importFrom(goalie,cause)
importFrom(goalie,false)
importFrom(goalie,hasColnames)
importFrom(goalie,hasCols)
importFrom(goalie,hasDimnames)
importFrom(goalie,hasDuplicates)
importFrom(goalie,hasLength)
importFrom(goalie,hasNames)
importFrom(goalie,hasNoDuplicates)
importFrom(goalie,hasRownames)
importFrom(goalie,hasRows)
importFrom(goalie,hasValidDimnames)
importFrom(goalie,hasValidNames)
importFrom(goalie,isADirectory)
importFrom(goalie,isAFile)
importFrom(goalie,isAUrl)
importFrom(goalie,isAny)
importFrom(goalie,isCharacter)
importFrom(goalie,isFlag)
importFrom(goalie,isInRange)
importFrom(goalie,isInstalled)
importFrom(goalie,isInt)
importFrom(goalie,isNonNegative)
importFrom(goalie,isNumber)
importFrom(goalie,isPositive)
importFrom(goalie,isScalar)
importFrom(goalie,isString)
importFrom(goalie,isSubset)
importFrom(goalie,matchesUniqueGeneNames)
importFrom(goalie,requireNamespaces)
importFrom(goalie,validNames)
importFrom(methods,as)
importFrom(methods,is)
importFrom(methods,new)
importFrom(methods,setMethod)
importFrom(methods,setReplaceMethod)
importFrom(methods,signature)
importFrom(methods,validObject)
importFrom(utils,sessionInfo)
importMethodsFrom(AcidBase,headtail)
importMethodsFrom(AcidGenomes,EnsemblToNcbi)
importMethodsFrom(AcidGenomes,GeneToSymbol)
importMethodsFrom(AcidGenomes,NcbiToEnsembl)
importMethodsFrom(AcidGenomes,TxToGene)
importMethodsFrom(AcidGenomes,stripGeneVersions)
importMethodsFrom(AcidGenomes,stripTranscriptVersions)
importMethodsFrom(AcidPlyr,leftJoin)
importMethodsFrom(AcidPlyr,mutateAt)
importMethodsFrom(pipette,atomize)
importMethodsFrom(pipette,droplevels2)
importMethodsFrom(pipette,export)
importMethodsFrom(pipette,factorize)
importMethodsFrom(pipette,import)
importMethodsFrom(pipette,removeNa)
importMethodsFrom(syntactic,camelCase)
importMethodsFrom(syntactic,dottedCase)
importMethodsFrom(syntactic,makeNames)
importMethodsFrom(syntactic,snakeCase)
importMethodsFrom(syntactic,upperCamelCase)