Dcm2bids (including dcm2bids_scaffold) #293
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MontrealSergiy
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The integration is a bit straightforward and supports all the input parameters suggested
dcm2bids. It offers three options with respect to desired output format, so user will have to chose one of followingdcm2bids_scaffoldand places a single subject folder thereIt does not support handling DICOM dataset with many subjects, user should split the original DICOM into singe subject folders themselves. Vladimir uses a python library for that,
however so far splitting of DICOM onto subjects (aka participants) is not integrated, should be done by user.
User might be provided with Extended CBRAIN File List.
The
dcm2bids_helperis not integrated based on preliminary recommendation of Bryan. User can run it, ordcm2niion his machine or JypiterHub to better understand the protocol and configure conversion.I suggest as a first step the tool should be deployed and open only for several trusted users for testing and preliminary feedback (maybe Naj or Vladimir).
PS. There is an older version of
dcm2niiin CBRAIN yet there is a third party boutiques for a recent dcm2nii, probably may be integrated to CBRAIN if needed.