Bunch of SQLAlchemy definitions #44
Workflow file for this run
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| name: Integration tests | |
| on: | |
| pull_request: | |
| push: | |
| branches: | |
| - 'main' | |
| - '*-release' | |
| jobs: | |
| docker: | |
| name: Docker | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out LORIS-MRI | |
| uses: actions/checkout@v4 | |
| - name: Clone the LORIS core repository | |
| run: git clone https://github.com/aces/Loris.git /tmp/Loris | |
| - name: Import database files | |
| run: | | |
| mkdir -p ./test/database | |
| mkdir -p ./test/database/SQL | |
| mkdir -p ./test/database/raisinbread/RB_files | |
| mkdir -p ./test/database/raisinbread/instruments/instrument_sql | |
| mkdir -p ./test/database/test/test_instrument | |
| cp -r /tmp/Loris/SQL/* ./test/database/SQL | |
| cp -r ./test/RB_SQL/* ./test/database/raisinbread/RB_files | |
| cp -r -n /tmp/Loris/raisinbread/RB_files/* ./test/database/raisinbread/RB_files | |
| cp -r /tmp/Loris/raisinbread/instruments/instrument_sql/* ./test/database/raisinbread/instruments/instrument_sql | |
| cp -r /tmp/Loris/test/test_instrument/testtest.sql ./test/database/test/test_instrument/testtest.sql | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Build Docker database image | |
| uses: docker/build-push-action@v6 | |
| with: | |
| context: . | |
| file: ./test/db.Dockerfile | |
| build-args: | | |
| BASE_DIR=/app/ | |
| tags: loris-db | |
| load: true | |
| cache-from: type=gha,scope=loris-db | |
| cache-to: type=gha,scope=loris-db | |
| - name: Build Docker MRI image | |
| uses: docker/build-push-action@v6 | |
| with: | |
| context: . | |
| file: ./test/mri.Dockerfile | |
| tags: loris-mri | |
| load: true | |
| cache-from: type=gha,scope=loris-mri | |
| cache-to: type=gha,scope=loris-mri | |
| - name: Run integration tests | |
| run: docker compose --file ./test/docker-compose.yml run mri pytest python/tests/integration |