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temporary fix for problem debugged with jesscall #80

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temporary fix for problem debugged with jesscall #80

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24 changes: 20 additions & 4 deletions python/libs/Modifier.py
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Original file line number Diff line number Diff line change
Expand Up @@ -72,7 +72,7 @@ def clean_dataset_files(self):
def modify_dataset_description_json(self):
# EEG2BIDS Wizard version
appVersion = 'unknown'

try:
with open(os.path.join(os.path.dirname(__file__), '../../package.json'), "r") as fp:
file_data = json.load(fp)
Expand Down Expand Up @@ -238,16 +238,25 @@ def copy_event_files(self):
rows = list(reader)
tsv_file.close()

header_case = ''

for line in rows:
try:
header_case = 1
onset, duration, trial_type, value, sample = line
output.append([onset, duration, trial_type, value, sample])
except ValueError:
try:
header_case = 2
onset, duration, trial_type = line
output.append([onset, duration, trial_type, 'n/a', 'n/a'])
except ValueError:
print('error: ValueError')
try:
header_case = 3
onset, duration, trial_type, response_time, value, sample = line
output.append([onset, duration, trial_type, response_time, value, sample])
except ValueError:
print('error: ValueError')

path_event_files = ''
# We search for the events.tsv file.
Expand Down Expand Up @@ -275,7 +284,11 @@ def copy_event_files(self):
onset, duration, trial_type = line
output.append([onset, duration, trial_type, 'n/a', 'n/a'])
except ValueError:
print('error: ValueError')
try:
onset, duration, trial_type, response_time, value, sample = line
output.append([onset, duration, trial_type, response_time, value, sample])
except ValueError:
print('error: ValueError')
except:
print('No events.tsv found in the BIDS folder.')
else:
Expand All @@ -287,7 +300,10 @@ def copy_event_files(self):

# overwrite BIDS events.tsv with collected data.
with open(path_event_files, mode='a+', newline='') as tsv_file:
headers = ['onset', 'duration', 'trial_type', 'value', 'sample']
if header_case == 3:
headers = ['onset', 'duration', 'trial_type', 'response_time', 'value', 'sample']
else:
headers = ['onset', 'duration', 'trial_type', 'value', 'sample']
writer = csv.writer(tsv_file, delimiter='\t')
writer.writerow(headers)
writer.writerows(output)
Expand Down