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1. vcf_to_gff3 vcf_to_gff3 Public

   VCF TO GFF3 Converter | Sharing this since I haven't found one that works for me. This one (https://gist.github.com/danwiththeplan/3989411) didn't. I think there's one for iplant but it's not public.

   Perl 1

2. xspf_creator xspf_creator Public

   XSPF Creator for Linux

3. drupal-chado-tripal--backupper drupal-chado-tripal--backupper Public

   A set of (meant to be interactive) shell scripts (and maybe in the future, C or other programs), to backup files in the server root directory and database dumps, related to the operation of the tri…

   Shell 1

4. http_basic_logout http_basic_logout Public

   A set of files for HTTP Basic logout mechanism. Specifically designed for the internal project I am working on with my company but you can easily customize it to suit your needs.

   JavaScript

5. blast_and_infer_subfeatures blast_and_infer_subfeatures Public

   A (quite messy but usable) Perl program to infer gene and its subfeatures on a (longer, not sure with shorter) suspected corresponding gene sequence in a new, but almost identical genome. Uses NCBI…

   Perl

6. map_variance_in_new_to_orig_genome map_variance_in_new_to_orig_genome Public

   This is a program to map variances that were retrieved on a created, mostly similar genome, to the origin/base genome. Takes in variances (SNPs and INDELs only for now) in VCF format, gets its near…

   Perl