Initial commit

.Rbuildignore

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+^scimo\.Rproj$
+^\.Rproj\.user$
+^dev$
+^LICENSE\.md$
+^README\.Rmd$

.gitignore

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+.Rproj.user
+.Rhistory
+.Rdata
+.httr-oauth
+.DS_Store
+.quarto

DESCRIPTION

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+Package: scimo
+Title: Extra Recipes Steps For Dealing With Omics Data
+Version: 0.0.0.9000
+Authors@R: c(
+    person("Antoine", "BICHAT", , "[email protected]", role = c("aut", "cre"),
+           comment = c(ORCID = "0000-0001-6599-7081"))
+  )
+Description: Omics data (e.g. transcriptomics, proteomics, metagenomics...) 
+    offer a detailed and multi-dimensional perspective on the molecular 
+    components and interactions within complex biological (eco)systems. 
+    Analyzing these data requires adapted procedures, which are implemented as 
+    steps according to the 'recipes' package.
+License: GPL (>= 3)
+Encoding: UTF-8
+Roxygen: list(markdown = TRUE)
+RoxygenNote: 7.2.3

NAMESPACE

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+# Generated by roxygen2: do not edit by hand
+

NEWS.md

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+# scimo 0.0.0.9000

README.Rmd

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+---
+output: github_document
+---
+
+<!-- README.md is generated from README.Rmd. Please edit that file -->
+
+```{r, include = FALSE}
+knitr::opts_chunk$set(
+  collapse = TRUE,
+  comment = "#>",
+  fig.path = "man/figures/README-",
+  out.width = "100%"
+)
+```
+
+# scimo
+
+```{r, echo = FALSE}
+version <- as.vector(read.dcf('DESCRIPTION')[, 'Version'])
+version <- gsub('-', '.', version)
+```
+
+<!-- badges: start -->
+[![packageversion](https://img.shields.io/badge/version-`r version`-orange.svg)](commits/master)
+<!-- badges: end -->
+
+**scimo** provides extra recipes steps for dealing with omics data.
+
+## Installation
+
+You can install the development version of **scimo** like so:
+
+``` r
+# FILL THIS IN! HOW CAN PEOPLE INSTALL YOUR DEV PACKAGE?
+```
+
+## Example
+
+This is a basic example which shows you how to solve a common problem:
+
+```{r example}
+library(scimo)
+## basic example code
+```

README.md

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+
+<!-- README.md is generated from README.Rmd. Please edit that file -->
+
+# scimo
+
+<!-- badges: start -->
+
+[![packageversion](https://img.shields.io/badge/version-0.0.0.9000-orange.svg)](commits/master)
+<!-- badges: end -->
+
+**scimo** provides extra recipes steps for dealing with omics data.
+
+## Installation
+
+You can install the development version of **scimo** like so:
+
+``` r
+# FILL THIS IN! HOW CAN PEOPLE INSTALL YOUR DEV PACKAGE?
+```
+
+## Example
+
+This is a basic example which shows you how to solve a common problem:
+
+``` r
+library(scimo)
+## basic example code
+```

dev/dev_history.R

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+library(devtools)
+library(testthat)
+
+# use_build_ignore("dev/")
+
+# use_gpl3_license()
+
+# use_news_md()
+
+# use_readme_rmd()
+
+use_git()

scimo.Rproj

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+Version: 1.0
+
+RestoreWorkspace: No
+SaveWorkspace: No
+AlwaysSaveHistory: Default
+
+EnableCodeIndexing: Yes
+UseSpacesForTab: Yes
+NumSpacesForTab: 2
+Encoding: UTF-8
+
+RnwWeave: Sweave
+LaTeX: pdfLaTeX
+
+AutoAppendNewline: Yes
+StripTrailingWhitespace: Yes
+LineEndingConversion: Posix
+
+BuildType: Package
+PackageUseDevtools: Yes
+PackageInstallArgs: --no-multiarch --with-keep.source
+PackageRoxygenize: rd,collate,namespace