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Releases: abdenlab/oxbow

v0.3.2

01 Dec 16:27
d99326b
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What's Changed

  • chore: Update dependencies by @ghuls in #63
  • feat: Use BufReader for reading BAM files with file-like objects by @pkerpedjiev in #68
  • feat(py): Use BufReader for PyFileLikeObject with 1MB buffer by @manzt in #69
  • feat(r): Update r-oxbow dependencies and replace deprecated APIs by @CGMossa in #66

New Contributors

Full Changelog: v0.3.1...v0.3.2

v0.3.1

26 Jan 19:55
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What's Changed

Full Changelog: v0.3.0...v0.3.1

v0.3.0

26 Oct 17:30
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  • New readers: BigBed, GFF, GTF
  • File-like object support for readers
  • BigWig zoom levels for bigwig reader
  • Bam tags for bam reader
  • Py-oxbow sphinx docs and tests

v0.2.0

30 Jul 14:14
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New features (rust, python, r)

  • Added genomic range query readers for indexed VCF, BCF, as well as FASTA and FASTQ
  • Support for virtual position-based range queries for indexed BAM, VCF, BCF
  • Virtual position-based partitioning from index files