Bump to 1.13.20 and pin version 1.9.3 of the web app. #220
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| # Adapted from usethis::use_github_action_check_standard() | |
| name: Comprehensive test | |
| on: | |
| push: | |
| branches: | |
| - main | |
| paths: | |
| - '.github/workflows/comprehensive.yml' | |
| - '.Rbuildignore' | |
| - 'data/**' | |
| - 'DESCRIPTION' | |
| - 'inst/tinytest/**' | |
| - 'man/**' | |
| - 'NAMESPACE' | |
| - 'R/**' | |
| - 'tests/**' | |
| - 'vignettes/**' | |
| pull_request: | |
| branches: | |
| - main | |
| paths: | |
| - '.github/workflows/comprehensive.yml' | |
| - '.Rbuildignore' | |
| - 'data/**' | |
| - 'DESCRIPTION' | |
| - 'inst/tinytest/**' | |
| - 'man/**' | |
| - 'NAMESPACE' | |
| - 'R/**' | |
| - 'tests/**' | |
| - 'vignettes/**' | |
| workflow_dispatch: | |
| defaults: | |
| run: | |
| shell: bash {0} | |
| jobs: | |
| check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: windows-latest, r: 'release'} | |
| - {os: macOS-latest, r: 'release'} | |
| - {os: ubuntu-20.04, r: '3.6.3'} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: r-lib/actions/setup-r@v2-branch | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Install TinyTeX | |
| uses: r-lib/actions/setup-tinytex@v2 | |
| env: | |
| # install full prebuilt version | |
| TINYTEX_INSTALLER: TinyTeX | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| cache-version: 1 | |
| - name: Build | |
| run: R CMD build --no-manual . | |
| - name: Check | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| _R_CHECK_CRAN_INCOMING_REMOTE_: false | |
| TT_AT_HOME: TRUE | |
| run: R CMD check --no-manual --as-cran OmicNavigator_*.tar.gz | |
| - name: Test results | |
| if: always() | |
| run: cat OmicNavigator.Rcheck/tests/tinytest.Rout* | |
| deploy-main: | |
| needs: check | |
| if: ${{ github.repository == 'abbvie-external/OmicNavigator' && github.event_name != 'pull_request' }} | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Deploy main dispatch | |
| uses: peter-evans/repository-dispatch@v1 | |
| with: | |
| token: ${{ secrets.REPO_ACCESS_TOKEN }} | |
| repository: abbvie-internal/OmicNavigatorCD | |
| event-type: deploy-main | |
| client-payload: '{ | |
| "repository": "${{ github.repository }}", | |
| "ref": "${{ github.ref }}", | |
| "sha": "${{ github.sha }}", | |
| "workflow": "${{ github.workflow }}", | |
| "run_id": "${{ github.run_id }}", | |
| "run_number": "${{ github.run_number }}" | |
| }' |