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a-slide · Nov 26, 2021 · ef44b78 · ef44b78
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diff --git a/NanoCount/__init__.py b/NanoCount/__init__.py
@@ -1,7 +1,7 @@
 # -*- coding: utf-8 -*-
 
 __name__ = "NanoCount"
-__version__ = "1.0.0.post3"
+__version__ = "1.0.0.post4"
 __description__ = "NanoCount estimates transcripts abundance from Oxford Nanopore *direct-RNA sequencing* datasets, using an expectation-maximization approach like RSEM, Kallisto, salmon, etc to handle the uncertainty of multi-mapping reads"
 __url__ = "https://github.com/a-slide/NanoCount/"
 __licence__ = "MIT"

diff --git a/README.md b/README.md
@@ -1,4 +1,4 @@
-# NanoCount v1.0.0.post3
+# NanoCount v1.0.0.post4
 
 ![NanoCount](./docs/pictures/NanoCount.png)
 
@@ -15,7 +15,7 @@
 
 **NanoCount estimates transcripts abundance from Oxford Nanopore *direct-RNA sequencing* datasets, using an expectation-maximization approach like RSEM, Kallisto, salmon, etc to handle the uncertainty of multi-mapping reads**
 
-Full documentation is available at https://adrienleger.com/NanoCount/
+Full documentation is available at https:// a-slide.github.io/nanocount/
 
 ---
 
@@ -33,7 +33,7 @@ Thank you
 
 The repository is archived at Zenodo. If you use NanoCount please cite as follow:
 
-Adrien Leger. (2020, January 28). a-slide/NanoCount. Zenodo. https://zenodo.org/badge/latestdoi/142873004
+Josie Gleeson, Adrien Leger, Yair D J Prawer, Tracy A Lane, Paul J Harrison, Wilfried Haerty, Michael B Clark, Accurate expression quantification from nanopore direct RNA sequencing with NanoCount, Nucleic Acids Research, 2021;, gkab1129, https://doi.org/10.1093/nar/gkab1129
 
 ### licence
 

diff --git a/docs/index.md b/docs/index.md
@@ -1,4 +1,4 @@
-# Welcome to NanoCount v1.0.0.post3 documentation
+# Welcome to NanoCount v1.0.0.post4 documentation
 
 [NanoCount](pictures/NanoCount.png)
 
@@ -46,7 +46,7 @@ NanoCount -i aligned_reads.bam -o transcript_counts.tsv
 
 The repository is archived at Zenodo. If you use NanoCount please cite as follow:
 
-Adrien Leger. (2020, January 28). a-slide/NanoCount. Zenodo. https://zenodo.org/badge/latestdoi/142873004
+Josie Gleeson, Adrien Leger, Yair D J Prawer, Tracy A Lane, Paul J Harrison, Wilfried Haerty, Michael B Clark, Accurate expression quantification from nanopore direct RNA sequencing with NanoCount, Nucleic Acids Research, 2021;, gkab1129, https://doi.org/10.1093/nar/gkab1129
 
 ### licence
 

diff --git a/meta.yaml b/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.0.0.post3" %}
+{% set version = "1.0.0.post4" %}
 {% set name = "NanoCount" %}
 
 package:
@@ -35,7 +35,7 @@ test:
 
 about:
   home: https://github.com/a-slide/NanoCount/
-  doc_url: https://adrienleger.com/NanoCount/
+  doc_url: https:// a-slide.github.io/nanocount/
   license: MIT
   licence_url: https://mit-license.org/
   summary: NanoCount estimates transcripts abundance from Oxford Nanopore *direct-RNA sequencing* datasets, using an expectation-maximization approach like RSEM, Kallisto, salmon, etc to handle the uncertainty of multi-mapping reads

diff --git a/mkdocs.yml b/mkdocs.yml
@@ -2,7 +2,7 @@
 site_name: NanoCount
 site_description: NanoCount estimates transcripts abundance from Oxford Nanopore *direct-RNA sequencing* datasets, using an expectation-maximization approach like RSEM, Kallisto, salmon, etc to handle the uncertainty of multi-mapping reads
 site_author: Adrien Leger
-site_url: https://adrienleger.com/NanoCount/
+site_url: https:// a-slide.github.io/nanocount/
 
 # Repository
 repo_name: 'a-slide/NanoCount'

diff --git a/setup.py b/setup.py
@@ -11,7 +11,7 @@
 setup(
     name="NanoCount",
     description="NanoCount estimates transcripts abundance from Oxford Nanopore *direct-RNA sequencing* datasets, using an expectation-maximization approach like RSEM, Kallisto, salmon, etc to handle the uncertainty of multi-mapping reads",
-    version="1.0.0.post3",
+    version="1.0.0.post4",
     long_description=long_description,
     long_description_content_type="text/markdown",
     url="https://github.com/a-slide/NanoCount/",

diff --git a/versipy.yaml b/versipy.yaml
@@ -5,7 +5,7 @@ version:
   a: null
   b: null
   rc: null
-  post: 3
+  post: 4
   dev: null
 managed_values:
   __package_name__: NanoCount
@@ -31,7 +31,10 @@ managed_values:
   __classifiers_3__: 'Topic :: Scientific/Engineering :: Bio-Informatics'
   __classifiers_4__: 'License :: OSI Approved :: MIT License'
   __classifiers_5__: 'Programming Language :: Python :: 3'
-  __citation__: Josie Gleeson, Adrien Leger, Yair D J Prawer, Tracy A Lane, Paul J Harrison, Wilfried Haerty, Michael B Clark, Accurate expression quantification from nanopore direct RNA sequencing with NanoCount, Nucleic Acids Research, 2021;, gkab1129, https://doi.org/10.1093/nar/gkab1129
+  __citation__: Josie Gleeson, Adrien Leger, Yair D J Prawer, Tracy A Lane, Paul J
+    Harrison, Wilfried Haerty, Michael B Clark, Accurate expression quantification
+    from nanopore direct RNA sequencing with NanoCount, Nucleic Acids Research, 2021;,
+    gkab1129, https://doi.org/10.1093/nar/gkab1129
 managed_files:
   .versipy/setup.py: setup.py
   .versipy/meta.yaml: meta.yaml

diff --git a/versipy_history.txt b/versipy_history.txt
@@ -21,3 +21,4 @@
 2021-10-27 09:39:27.221554	1.0.0.post1	minor doc change
 2021-10-27 23:26:41.943187	1.0.0.post2	main doc update
 2021-10-27 23:40:29.979747	1.0.0.post3	main doc update
+2021-11-26 09:01:25.733973	1.0.0.post4	Update citation