Merge pull request #7 from a-slide/dev

Dev

NanoCount/NanoCount.py

@@ -160,10 +160,12 @@ def _parse_bam (self):
 
             # In case the primary hit was removed by filters
             if best_hit:
-                if best_hit.align_len == 0:
-                    c["Read with zero score"] +=1
+                if best_hit.align_score == 0:
+                    c["Reads with zero score"] +=1
+                elif best_hit.align_len == 0:
+                    c["Reads with zero len"] +=1
                 elif best_hit.qlen < self.min_read_length:
-                    c["Read too short"] +=1
+                    c["Reads too short"] +=1
                 elif best_hit.query_fraction_aligned < self.min_query_fraction_aligned:
                     c["Best hit with low query fraction aligned"] +=1
                 else:

NanoCount/__init__.py

@@ -1,6 +1,6 @@
 # -*- coding: utf-8 -*-
 
 # Define self package variable
-__version__ = "0.2.0"
+__version__ = "0.2.1"
 __all__ = ["NanoCount", "Read"]
 __description__ = "EM based transcripts abundance estimation from nanopore reads mapped to a transcriptome with minimap2"

meta.yaml

@@ -1,4 +1,4 @@
-{% set version = "0.2.0" %}
+{% set version = "0.2.1" %}
 {% set name = "NanoCount" %}
 
 package:

setup.py

@@ -6,7 +6,7 @@
 
 # Define package info
 name = "NanoCount"
-version = "0.2.0"
+version = "0.2.1"
 description = "EM based transcripts abundance estimation from nanopore reads mapped to a transcriptome with minimap2"
 with open("README.md", "r") as fh:
     long_description = fh.read()