MarkovHC

Author: Zhenyi Wang
Any suggestions and remarks might be addressed to Zhenyi Wang: [email protected]

MarkovHC as a novel single-cell omics data analysis tool, can facilitate the stratification of cells, identification of cell population hierarchical structures, and characterization of cellular trajectories and critical points.

MarkovHC is described in:
MarkovHC: Markov hierarchical clustering for the topological structure of high-dimensional single-cell omics data with transition pathway and critical point detection.

Installation

• To install, follow the instructions in INSTALL.md

Example Code

• To get started, check out the Quick Start Tutorial:

  1. Basic commands
  2. Walkthrough – MarkovHC analysis of early gastric cancer data
  3. Walkthrough – MarkovHC analysis of 33k PBMCs data

• The codes of data analysis in our paper are freely available below:

  1. Figure2
  2. Figure3
  3. Figure4
  4. Supplementary Figures.