Execution of DEgene calculation
Input: Genome fasta file & Genome gff file & RNA raw seqeuences downloaded from NCBI
Output: FPKM table
Docker hub: https://hub.docker.com/r/lsbnb/docexpress
docker pull lsbnb/docexpress
docker run -itd --name docexp -p 8999:80 -p 8021:21 -p 8022:22 -v Path:/in -w /in lsbnb/docexpress bash
docker exec -it docexp bash
chmod -R 777 /in/
nohup sh doc.sh -p 20 -d /path/to/sra/ -g genome.fna -f genome.gff &