Bump the dependencies group across 1 directory with 4 updates (#225)

Bumps the dependencies group with 4 updates in the / directory: [scipy](https://github.com/scipy/scipy), [matplotlib](https://github.com/matplotlib/matplotlib), [pre-commit](https://github.com/pre-commit/pre-commit) and [pylint](https://github.com/pylint-dev/pylint).


Updates `scipy` from 1.13.0 to 1.13.1
- [Release notes](https://github.com/scipy/scipy/releases)
- [Commits](scipy/scipy@v1.13.0...v1.13.1)

Updates `matplotlib` from 3.8.4 to 3.9.0
- [Release notes](https://github.com/matplotlib/matplotlib/releases)
- [Commits](matplotlib/matplotlib@v3.8.4...v3.9.0)

Updates `pre-commit` from 3.7.0 to 3.7.1
- [Release notes](https://github.com/pre-commit/pre-commit/releases)
- [Changelog](https://github.com/pre-commit/pre-commit/blob/main/CHANGELOG.md)
- [Commits](pre-commit/pre-commit@v3.7.0...v3.7.1)

Updates `pylint` from 3.1.0 to 3.2.3
- [Release notes](https://github.com/pylint-dev/pylint/releases)
- [Commits](pylint-dev/pylint@v3.1.0...v3.2.3)

---
updated-dependencies:
- dependency-name: scipy
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: dependencies
- dependency-name: matplotlib
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: dependencies
- dependency-name: pre-commit
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: dependencies
- dependency-name: pylint
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: dependencies
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>