This repository contains the Nextflow workflow usable for processing RNA-seq data. This workflow will performs QC (including adapter clipping), mapping, variant-calling and expression quantification.
This repository also contains the Nextflow workflow for long reads fusion and novel transcript detection using short reads as input.
This workflow is part of the Sequencing Analysis Support Core workflow repository.
For any question related to RNA-seq, please use the github issue tracker or contact the SASC team directly at: [email protected].