V0.4.0

.github/workflows/cd.yml

@@ -0,0 +1,58 @@
+name: Build and Test
+
+on:
+  push:
+    branches: [ main ]
+  pull_request:
+    branches: [ main ]
+
+jobs:
+  build:
+    name: Build (${{ matrix.os }}, Python ${{ matrix.python-version }})
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        os: [ubuntu-latest, macos-latest]
+        python-version: ["3.11", "3.12", "3.13"]
+
+    steps:
+    - name: Checkout code
+      uses: actions/checkout@v4
+
+    - name: Update submodules
+      run: git submodule update --init --recursive
+
+    - name: Install uv and set the python version
+      uses: astral-sh/setup-uv@v5
+      with:
+        python-version: ${{ matrix.python-version }}
+
+    - name: Install system dependencies (Linux)
+      if: runner.os == 'Linux'
+      run: |
+        sudo apt-get update
+        sudo apt-get install -y cmake build-essential libomp-dev libopenblas-dev
+
+    - name: Install system dependencies (macOS)
+      if: runner.os == 'macOS'
+      run: |
+        brew update
+        brew install cmake libomp openblas
+
+    - name: Install the project
+      run: uv sync
+
+    - name: Build the project
+      run: uv build .
+
+    - name: Check installable from sdist
+      run: |
+        uv pip uninstall thundersvm --yes
+        uv pip install dist/thundersvm-*.tar.gz
+        uv run python -c "import thundersvm; print(thundersvm.__version__)"
+
+    - name: Check installable from wheel
+      run: |
+        uv pip uninstall thundersvm --yes
+        uv pip install dist/thundersvm-*.whl
+        uv run python -c "import thundersvm; print(thundersvm.__version__)"

.github/workflows/ci.yml

@@ -0,0 +1,51 @@
+name: CI Tests
+
+on:
+  push:
+    branches: [main]
+  pull_request:
+    branches: [main]
+
+jobs:
+  test-cpp:
+    runs-on: ubuntu-latest
+    steps:
+    - name: Checkout code
+      uses: actions/checkout@v4
+      with:
+        submodules: recursive
+
+    - name: Install system dependencies
+      run: |
+        sudo apt-get update
+        sudo apt-get install -y build-essential cmake libomp-dev libopenblas-dev
+
+    - name: Configure CMake
+      run: cmake -B build -DBUILD_TESTS=ON -DUSE_CUDA=OFF
+
+    - name: Build and test
+      run: cmake --build build --target run_tests
+
+  test-python:
+    runs-on: ubuntu-latest
+    steps:
+    - name: Checkout code
+      uses: actions/checkout@v4
+      with:
+        submodules: recursive
+
+    - name: Install system dependencies
+      run: |
+        sudo apt-get update
+        sudo apt-get install -y build-essential cmake
+
+    - name: Install uv and set the python version
+      uses: astral-sh/setup-uv@v5
+      with:
+        python-version: 3.12
+
+    - name: Install the project
+      run: uv sync --all-extras
+
+    - name: Run Python tests
+      run: uv run pytest tests/

.gitignore

@@ -1,19 +1,191 @@
-.*
-*.model
-!.gitignore
-!.gitmodules
-!.travis.yml
-!.appvetor.yml
-*build*
-dataset/*
-!dataset/*.sh
-!dataset/test_dataset.txt
-!scripts/*.sh
-html
-latex
-logs
-*.pyc
-*.dylib
-*.egg-info*
-python/dist/*
-python/build/**
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py,cover
+.hypothesis/
+.pytest_cache/
+cover/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+db.sqlite3-journal
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+.pybuilder/
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+#   For a library or package, you might want to ignore these files since the code is
+#   intended to run in multiple environments; otherwise, check them in:
+.python-version
+
+# pipenv
+#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
+#   However, in case of collaboration, if having platform-specific dependencies or dependencies
+#   having no cross-platform support, pipenv may install dependencies that don't work, or not
+#   install all needed dependencies.
+#Pipfile.lock
+
+# UV
+#   Similar to Pipfile.lock, it is generally recommended to include uv.lock in version control.
+#   This is especially recommended for binary packages to ensure reproducibility, and is more
+#   commonly ignored for libraries.
+uv.lock
+
+# poetry
+#   Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
+#   This is especially recommended for binary packages to ensure reproducibility, and is more
+#   commonly ignored for libraries.
+#   https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
+#poetry.lock
+
+# pdm
+#   Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control.
+#pdm.lock
+#   pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it
+#   in version control.
+#   https://pdm.fming.dev/latest/usage/project/#working-with-version-control
+.pdm.toml
+.pdm-python
+.pdm-build/
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
+__pypackages__/
+
+# Celery stuff
+celerybeat-schedule
+celerybeat.pid
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/
+
+# pytype static type analyzer
+.pytype/
+
+# Cython debug symbols
+cython_debug/
+
+# PyCharm
+#  JetBrains specific template is maintained in a separate JetBrains.gitignore that can
+#  be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
+#  and can be added to the global gitignore or merged into this file.  For a more nuclear
+#  option (not recommended) you can uncomment the following to ignore the entire idea folder.
+#.idea/
+
+# Ruff stuff:
+.ruff_cache/
+
+# PyPI configuration file
+.pypirc
+
+# Build directory
+build/
+
+
+CMakeLists.txt.user
+CMakeCache.txt
+CMakeFiles
+CMakeScripts
+Testing
+Makefile
+cmake_install.cmake
+install_manifest.txt
+compile_commands.json
+CTestTestfile.cmake
+_deps
+CMakeUserPresets.json

.gitmodules

@@ -1,6 +1,6 @@
 [submodule "eigen"]
 	path = eigen
 	url = https://github.com/eigenteam/eigen-git-mirror
-[submodule "src/test/googletest"]
-	path = src/test/googletest
+[submodule "googletest"]
+	path = src/thundersvm/cpp/test/googletest
 	url = https://github.com/google/googletest.git