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Hi. I am installing DRAM onto a fresh Ubuntu VM via mamba. Installation into a conda environment works without issue. However, setting up of the DRAM DBs with DRAM-setup.py is currently broken::
>DRAM-setup.py -h
File "/home/dparks/miniforge3/envs/DRAM/bin/DRAM-setup.py", line 124
set_db_locs_parser.add_argument('--camper_tar_gz_loc', default=None,
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
SyntaxError: invalid syntax. Perhaps you forgot a comma?
This does indeed appear to be due to invalid syntax on line 124 of DRAM-setup.py as shown below:
set_db_locs_parser.add_argument('--viral_loc', default=None,
set_db_locs_parser.add_argument('--camper_tar_gz_loc', default=None,
help='The source for the CAMPER database files, this is a tar.gz file downloaded'
' from the release page https://github.com/WrightonLabCSU/CAMPER/releases')
help='mmseqs2 database file from ref seq viral gene collection')
set_db_locs_parser.add_argument('--peptidase_loc', default=None,
help='mmseqs2 database file from MEROPS database')
Cheers,
Donovan
The text was updated successfully, but these errors were encountered:
Hi. I am installing DRAM onto a fresh Ubuntu VM via mamba. Installation into a conda environment works without issue. However, setting up of the DRAM DBs with
DRAM-setup.py
is currently broken::This does indeed appear to be due to invalid syntax on line 124 of
DRAM-setup.py
as shown below:Cheers,
Donovan
The text was updated successfully, but these errors were encountered: