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Update README.md
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Munfred authored Jun 18, 2021
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Expand Up @@ -22,7 +22,7 @@ Text files with gene descriptions can be downloaded [here](https://www.allianceg
Additionally, at least one column should be present in the `adata.obs`, such as for example `cell_type`.
The cell selection menu can be stratified according to any
number of columns that are present in the adata file. When launching the app, you just need to provide the name
of each column with the -s flag , eg `-s cell_type`. So for example, to offer the user the option to group cells
of each column with the `-s` flag , eg `-s cell_type`. So for example, to offer the user the option to group cells
by `cell_type`, `tissue` and `experiment_code` you would launch the app using the following arguments:
```
scdefg/app.py ./model -s tissue -s cell_type -s experiment_code
Expand Down Expand Up @@ -52,10 +52,11 @@ scdefg/app.py ./model -s tissue -s cell_type -s experiment_code
```


### Here is what the selection menu would look like in this case
## Here is what the selection menu would look like in this case
Showing the three fields: `tissue`, `cell_type`, `experiment_code`

![](https://user-images.githubusercontent.com/12504176/107468161-44bc3580-6b46-11eb-9175-d10e9749f747.png)

### Here is a view of the full page after results are returned
## A view of the full page after results are returned

![](https://user-images.githubusercontent.com/12504176/107468037-07f03e80-6b46-11eb-8b27-9bccc3b5e9a6.png)

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