fix: bug caused by changed tsdb api; #130
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| name: CI | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - dev | |
| - temp_test_branch # if in need, create such a temporary branch to test some functions | |
| pull_request: | |
| branches: | |
| - dev | |
| jobs: | |
| CI-testing: | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, windows-latest, macOS-latest] | |
| python-version: ["3.7", "3.8", "3.9", "3.10"] | |
| steps: | |
| - name: Check out the repo code | |
| uses: actions/checkout@v3 | |
| - name: Set up Conda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| activate-environment: pypots-test | |
| python-version: ${{ matrix.python-version }} | |
| environment-file: tests/environment_for_conda_test.yml | |
| auto-activate-base: false | |
| - name: Fetch the test environment details | |
| run: | | |
| which python | |
| conda info | |
| conda list | |
| - name: Test with pytest | |
| run: | | |
| # run tests separately here due to Segmentation Fault in test_clustering when run all in | |
| # one command with `pytest` on MacOS. Bugs not caught, so this is a trade-off to avoid SF. | |
| python -m pytest -rA tests/test_classification.py -n auto --cov=pypots --dist=loadgroup --cov-config=.coveragerc | |
| python -m pytest -rA tests/test_imputation.py -n auto --cov=pypots --cov-append --dist=loadgroup --cov-config=.coveragerc | |
| python -m pytest -rA tests/test_clustering.py -n auto --cov=pypots --cov-append --dist=loadgroup --cov-config=.coveragerc | |
| python -m pytest -rA tests/test_forecasting.py -n auto --cov=pypots --cov-append --dist=loadgroup --cov-config=.coveragerc | |
| python -m pytest -rA tests/test_optim.py -n auto --cov=pypots --cov-append --dist=loadgroup --cov-config=.coveragerc | |
| python -m pytest -rA tests/test_data.py -n auto --cov=pypots --cov-append --dist=loadgroup --cov-config=.coveragerc | |
| python -m pytest -rA tests/test_utils.py -n auto --cov=pypots --cov-append --dist=loadgroup --cov-config=.coveragerc | |
| python -m pytest -rA tests/test_cli.py -n auto --cov=pypots --cov-append --dist=loadgroup --cov-config=.coveragerc | |
| - name: Generate the LCOV report | |
| run: | | |
| python -m coverage lcov | |
| - name: Submit the report | |
| uses: coverallsapp/github-action@master | |
| with: | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| path-to-lcov: 'coverage.lcov' |