Added dataset and modified github actions workflow,

and tests to use added dataset.
WayScience · Nov 21, 2024 · 65414f4 · 65414f4
1 parent 66425a1
commit 65414f4
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Showing 4 changed files with 2 additions and 4 deletions.
diff --git a/.github/workflows/python-app.yml b/.github/workflows/python-app.yml
@@ -20,8 +20,6 @@ jobs:
     steps:
     - name: Checkout code with submodules
       uses: actions/checkout@v4
-      with:
-        submodules: true
 
     - name: Set up Python
       uses: actions/setup-python@v5

diff --git a/data/Plate_4_bulk_feature_selected.parquet b/data/Plate_4_bulk_feature_selected.parquet
diff --git a/tests/test_correctness_pairwise_compare_manager.py b/tests/test_correctness_pairwise_compare_manager.py
@@ -9,7 +9,7 @@
 
 # Paths to original nuclear speckle data
 data_dir = pathlib.Path(
-    "data/nf1_schwann_cell_painting_data/3.processing_features/data/bulk_profiles"
+    "data"
 ).resolve(strict=True)
 
 for file in data_dir.iterdir():

diff --git a/tests/test_fault_injections_compare_manager.py b/tests/test_fault_injections_compare_manager.py
@@ -9,7 +9,7 @@
 
 # Paths to original nuclear speckle data
 data_dir = pathlib.Path(
-    "data/nf1_schwann_cell_painting_data/3.processing_features/data/bulk_profiles"
+    "data"
 ).resolve(strict=True)
 
 plate4df = pd.read_parquet(data_dir / "Plate_4_bulk_feature_selected.parquet")