Update notebooks. Split OrdinaryDiffEq imports.

WIAS-PDELib · Sep 12, 2024 · 5f0a8f3 · 5f0a8f3
1 parent aa0548e
commit 5f0a8f3
Show file tree

Hide file tree

Showing 21 changed files with 309 additions and 1,077 deletions.
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -2,25 +2,29 @@
 ## v3.0 Planned  (pending some improvements in LinearSolve)
   - use `precs` based linear solver API, see https://github.com/SciML/LinearSolve.jl/pull/514
 
-## v2.0.0 September 4, 2024
+## v2.0.0 September 12, 2024
 
 ### Breaking:
-   - Remove deprecated solve methods:
+   - Removed deprecated solve methods:
 ````
-    CommonSolve.solve(inival, system::VoronoiFVM.AbstractSystem, lambdas;kwargs...)
-    CommonSolve.solve(inival, system::VoronoiFVM.AbstractSystem; kwargs...)
+    solve(inival, system::VoronoiFVM.AbstractSystem, lambdas;kwargs...)
+    solve(inival, system::VoronoiFVM.AbstractSystem; kwargs...)
     solve!(solution,inival, system::VoronoiFVM.AbstractSystem; kwargs...)
 ````
-   - History is now a field of the solution but not system, to be accessed with  ``history(sol)``, both for stationary and transient solutions
-   - [`VoronoiFVM.Physics`](@ref) callbacks (`flux`, `storage`, etc.) need a provided `data` argument
+   - History is now a field of the solution but not system, to be accessed with  ``history(solution)``, instead of ``history(system)`` both for stationary and transient solutions
+   - [`VoronoiFVM.Physics`](@ref) callbacks (`flux`, `storage`, etc.) need a `data` argument, even if `data` is not provided during ``Physics`` or ``System`` construction
 
 ### Added
-  - Introduced ``SystemState`` which contains entries (matrix, residuals) which before were
-    part of ``System``
-  - Introduced `solve!(state::SystemState)` method
+  - Introduced ``SystemState`` which contains entries (matrix, residuals, data) which before were
+    part of ``System``. One can have different states with different data for the same system.
+  - Introduced `solve!(state::SystemState; kwargs...)` method
   - Stationary solutions now contain a history entry and are subtypes of VoronoiFVM.AbstractSolutionArray
   - Changelog now in package root
 
+### Modified
+  - Sparse solver default for Float64 in all space dimensions is now  UMFPACKFactorization. For all other
+    number types it is SparspakFactorization. Before it was KLU for 1D, Sparspak for 2D an UMFPACK for 3D.
+
 ## v1.25.0, Sept 9, 2024
 - [`VoronoiFVM.Physics`](@ref) callbacks (`flux`, `storage`, etc.) without `data` argument are now deprecated
 

diff --git a/docs/Project.toml b/docs/Project.toml
@@ -19,7 +19,11 @@ LinearSolve = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae"
 Logging = "56ddb016-857b-54e1-b83d-db4d58db5568"
 Markdown = "d6f4376e-aef5-505a-96c1-9c027394607a"
 Metis = "2679e427-3c69-5b7f-982b-ece356f1e94b"
-OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"
+OrdinaryDiffEqBDF = "6ad6398a-0878-4a85-9266-38940aa047c8"
+OrdinaryDiffEqLowOrderRK = "1344f307-1e59-4825-a18e-ace9aa3fa4c6"
+OrdinaryDiffEqRosenbrock = "43230ef6-c299-4910-a778-202eb28ce4ce"
+OrdinaryDiffEqSDIRK = "2d112036-d095-4a1e-ab9a-08536f3ecdbf"
+OrdinaryDiffEqTsit5 = "b1df2697-797e-41e3-8120-5422d3b24e4a"
 Pkg = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
 PlotThemes = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a"
 Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"

diff --git a/docs/make.jl b/docs/make.jl
@@ -1,5 +1,7 @@
 using Documenter, ExampleJuggler, PlutoStaticHTML, VoronoiFVM, DocumenterCitations
-using ExtendableGrids, GridVisualize, LinearAlgebra, OrdinaryDiffEq, RecursiveArrayTools, SciMLBase
+using ExtendableGrids, GridVisualize, LinearAlgebra, RecursiveArrayTools, SciMLBase
+
+using OrdinaryDiffEqBDF, OrdinaryDiffEqLowOrderRK, OrdinaryDiffEqRosenbrock, OrdinaryDiffEqSDIRK, OrdinaryDiffEqTsit5 
 
 function make(; with_examples = true,
               with_notebooks = true)

diff --git a/examples/Example108_OrdinaryDiffEq1D.jl b/examples/Example108_OrdinaryDiffEq1D.jl
@@ -21,7 +21,7 @@ using Printf
 using VoronoiFVM
 using ExtendableGrids
 using GridVisualize
-using OrdinaryDiffEq
+using OrdinaryDiffEqRosenbrock
 
 function barenblatt(x, t, m)
     tx = t^(-1.0 / (m + 1.0))

diff --git a/pluto-examples/api-update.jl b/pluto-examples/api-update.jl
@@ -1,5 +1,5 @@
 ### A Pluto.jl notebook ###
-# v0.19.43
+# v0.19.40
 
 using Markdown
 using InteractiveUtils
@@ -520,7 +520,7 @@ Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
 VoronoiFVM = "82b139dc-5afc-11e9-35da-9b9bdfd336f3"
 
 [compat]
-CairoMakie = "~0.12.9"
+CairoMakie = "~0.12.10"
 ExtendableGrids = "~1.9.2"
 ExtendableSparse = "~1.5.1"
 GridVisualize = "~1.7.0"
@@ -537,7 +537,7 @@ PLUTO_MANIFEST_TOML_CONTENTS = """
 
 julia_version = "1.10.5"
 manifest_format = "2.0"
-project_hash = "899d2e4e12c0681149d489ef92770f9f84481bac"
+project_hash = "b744922ff0f8ea89e8fa0a15e203d132e3c21e25"
 
 [[deps.ADTypes]]
 git-tree-sha1 = "99a6f5d0ce1c7c6afdb759daa30226f71c54f6b0"
@@ -751,9 +751,9 @@ version = "1.1.0"
 
 [[deps.CairoMakie]]
 deps = ["CRC32c", "Cairo", "Cairo_jll", "Colors", "FileIO", "FreeType", "GeometryBasics", "LinearAlgebra", "Makie", "PrecompileTools"]
-git-tree-sha1 = "361dec06290d76b6d70d0c7dc888038eec9df63a"
+git-tree-sha1 = "3443ecd9d38c1aeb2c6d0fa3a01598a59929da1d"
 uuid = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0"
-version = "0.12.9"
+version = "0.12.10"
 
 [[deps.Cairo_jll]]
 deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"]
@@ -1524,9 +1524,9 @@ version = "3.100.2+0"
 
 [[deps.LLVMOpenMP_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "e16271d212accd09d52ee0ae98956b8a05c4b626"
+git-tree-sha1 = "78211fb6cbc872f77cad3fc0b6cf647d923f4929"
 uuid = "1d63c593-3942-5779-bab2-d838dc0a180e"
-version = "17.0.6+0"
+version = "18.1.7+0"
 
 [[deps.LZO_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
@@ -1768,16 +1768,16 @@ uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09"
 version = "0.5.13"
 
 [[deps.Makie]]
-deps = ["Animations", "Base64", "CRC32c", "ColorBrewer", "ColorSchemes", "ColorTypes", "Colors", "Contour", "Dates", "DelaunayTriangulation", "Distributions", "DocStringExtensions", "Downloads", "FFMPEG_jll", "FileIO", "FilePaths", "FixedPointNumbers", "Format", "FreeType", "FreeTypeAbstraction", "GeometryBasics", "GridLayoutBase", "ImageIO", "InteractiveUtils", "IntervalSets", "Isoband", "KernelDensity", "LaTeXStrings", "LinearAlgebra", "MacroTools", "MakieCore", "Markdown", "MathTeXEngine", "Observables", "OffsetArrays", "Packing", "PlotUtils", "PolygonOps", "PrecompileTools", "Printf", "REPL", "Random", "RelocatableFolders", "Scratch", "ShaderAbstractions", "Showoff", "SignedDistanceFields", "SparseArrays", "Statistics", "StatsBase", "StatsFuns", "StructArrays", "TriplotBase", "UnicodeFun", "Unitful"]
-git-tree-sha1 = "204f06860af9008fa08b3a4842f48116e1209a2c"
+deps = ["Animations", "Base64", "CRC32c", "ColorBrewer", "ColorSchemes", "ColorTypes", "Colors", "Contour", "Dates", "DelaunayTriangulation", "Distributions", "DocStringExtensions", "Downloads", "FFMPEG_jll", "FileIO", "FilePaths", "FixedPointNumbers", "Format", "FreeType", "FreeTypeAbstraction", "GeometryBasics", "GridLayoutBase", "ImageBase", "ImageIO", "InteractiveUtils", "Interpolations", "IntervalSets", "Isoband", "KernelDensity", "LaTeXStrings", "LinearAlgebra", "MacroTools", "MakieCore", "Markdown", "MathTeXEngine", "Observables", "OffsetArrays", "Packing", "PlotUtils", "PolygonOps", "PrecompileTools", "Printf", "REPL", "Random", "RelocatableFolders", "Scratch", "ShaderAbstractions", "Showoff", "SignedDistanceFields", "SparseArrays", "Statistics", "StatsBase", "StatsFuns", "StructArrays", "TriplotBase", "UnicodeFun", "Unitful"]
+git-tree-sha1 = "768151abed75c6cf5be774456ae82bf9bb7274e9"
 uuid = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a"
-version = "0.21.9"
+version = "0.21.10"
 
 [[deps.MakieCore]]
 deps = ["ColorTypes", "GeometryBasics", "IntervalSets", "Observables"]
-git-tree-sha1 = "b0e2e3473af351011e598f9219afb521121edd2b"
+git-tree-sha1 = "4b7aa3b9c51d1d9db74e2401dd1d1eaec416ee55"
 uuid = "20f20a25-4f0e-4fdf-b5d1-57303727442b"
-version = "0.8.6"
+version = "0.8.7"
 
 [[deps.ManualMemory]]
 git-tree-sha1 = "bcaef4fc7a0cfe2cba636d84cda54b5e4e4ca3cd"
@@ -2152,15 +2152,15 @@ version = "3.5.18"
 
 [[deps.Rmath]]
 deps = ["Random", "Rmath_jll"]
-git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b"
+git-tree-sha1 = "852bd0f55565a9e973fcfee83a84413270224dc4"
 uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa"
-version = "0.7.1"
+version = "0.8.0"
 
 [[deps.Rmath_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "e60724fd3beea548353984dc61c943ecddb0e29a"
+git-tree-sha1 = "58cdd8fb2201a6267e1db87ff148dd6c1dbd8ad8"
 uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f"
-version = "0.4.3+0"
+version = "0.5.1+0"
 
 [[deps.RoundingEmulator]]
 git-tree-sha1 = "40b9edad2e5287e05bd413a38f61a8ff55b9557b"
@@ -2393,9 +2393,9 @@ version = "0.34.3"
 
 [[deps.StatsFuns]]
 deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"]
-git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a"
+git-tree-sha1 = "b423576adc27097764a90e163157bcfc9acf0f46"
 uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c"
-version = "1.3.1"
+version = "1.3.2"
 weakdeps = ["ChainRulesCore", "InverseFunctions"]
 
     [deps.StatsFuns.extensions]

diff --git a/pluto-examples/bernoulli.jl b/pluto-examples/bernoulli.jl
@@ -1,5 +1,5 @@
 ### A Pluto.jl notebook ###
-# v0.19.43
+# v0.19.40
 
 using Markdown
 using InteractiveUtils
@@ -322,7 +322,7 @@ Revise = "295af30f-e4ad-537b-8983-00126c2a3abe"
 VoronoiFVM = "82b139dc-5afc-11e9-35da-9b9bdfd336f3"
 
 [compat]
-CairoMakie = "~0.12.9"
+CairoMakie = "~0.12.10"
 ForwardDiff = "~0.10.36"
 Revise = "~3.5.18"
 VoronoiFVM = "~1.25.1"
@@ -334,7 +334,7 @@ PLUTO_MANIFEST_TOML_CONTENTS = """
 
 julia_version = "1.10.5"
 manifest_format = "2.0"
-project_hash = "c3df00d0fd37d483f75cd5c294a763579d154be6"
+project_hash = "6d5396a5ebf0872cea667a2537f72c2c27ce964c"
 
 [[deps.ADTypes]]
 git-tree-sha1 = "99a6f5d0ce1c7c6afdb759daa30226f71c54f6b0"
@@ -542,9 +542,9 @@ version = "1.1.0"
 
 [[deps.CairoMakie]]
 deps = ["CRC32c", "Cairo", "Cairo_jll", "Colors", "FileIO", "FreeType", "GeometryBasics", "LinearAlgebra", "Makie", "PrecompileTools"]
-git-tree-sha1 = "361dec06290d76b6d70d0c7dc888038eec9df63a"
+git-tree-sha1 = "3443ecd9d38c1aeb2c6d0fa3a01598a59929da1d"
 uuid = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0"
-version = "0.12.9"
+version = "0.12.10"
 
 [[deps.Cairo_jll]]
 deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"]
@@ -1303,9 +1303,9 @@ version = "3.100.2+0"
 
 [[deps.LLVMOpenMP_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "e16271d212accd09d52ee0ae98956b8a05c4b626"
+git-tree-sha1 = "78211fb6cbc872f77cad3fc0b6cf647d923f4929"
 uuid = "1d63c593-3942-5779-bab2-d838dc0a180e"
-version = "17.0.6+0"
+version = "18.1.7+0"
 
 [[deps.LZO_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
@@ -1542,16 +1542,16 @@ uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09"
 version = "0.5.13"
 
 [[deps.Makie]]
-deps = ["Animations", "Base64", "CRC32c", "ColorBrewer", "ColorSchemes", "ColorTypes", "Colors", "Contour", "Dates", "DelaunayTriangulation", "Distributions", "DocStringExtensions", "Downloads", "FFMPEG_jll", "FileIO", "FilePaths", "FixedPointNumbers", "Format", "FreeType", "FreeTypeAbstraction", "GeometryBasics", "GridLayoutBase", "ImageIO", "InteractiveUtils", "IntervalSets", "Isoband", "KernelDensity", "LaTeXStrings", "LinearAlgebra", "MacroTools", "MakieCore", "Markdown", "MathTeXEngine", "Observables", "OffsetArrays", "Packing", "PlotUtils", "PolygonOps", "PrecompileTools", "Printf", "REPL", "Random", "RelocatableFolders", "Scratch", "ShaderAbstractions", "Showoff", "SignedDistanceFields", "SparseArrays", "Statistics", "StatsBase", "StatsFuns", "StructArrays", "TriplotBase", "UnicodeFun", "Unitful"]
-git-tree-sha1 = "204f06860af9008fa08b3a4842f48116e1209a2c"
+deps = ["Animations", "Base64", "CRC32c", "ColorBrewer", "ColorSchemes", "ColorTypes", "Colors", "Contour", "Dates", "DelaunayTriangulation", "Distributions", "DocStringExtensions", "Downloads", "FFMPEG_jll", "FileIO", "FilePaths", "FixedPointNumbers", "Format", "FreeType", "FreeTypeAbstraction", "GeometryBasics", "GridLayoutBase", "ImageBase", "ImageIO", "InteractiveUtils", "Interpolations", "IntervalSets", "Isoband", "KernelDensity", "LaTeXStrings", "LinearAlgebra", "MacroTools", "MakieCore", "Markdown", "MathTeXEngine", "Observables", "OffsetArrays", "Packing", "PlotUtils", "PolygonOps", "PrecompileTools", "Printf", "REPL", "Random", "RelocatableFolders", "Scratch", "ShaderAbstractions", "Showoff", "SignedDistanceFields", "SparseArrays", "Statistics", "StatsBase", "StatsFuns", "StructArrays", "TriplotBase", "UnicodeFun", "Unitful"]
+git-tree-sha1 = "768151abed75c6cf5be774456ae82bf9bb7274e9"
 uuid = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a"
-version = "0.21.9"
+version = "0.21.10"
 
 [[deps.MakieCore]]
 deps = ["ColorTypes", "GeometryBasics", "IntervalSets", "Observables"]
-git-tree-sha1 = "b0e2e3473af351011e598f9219afb521121edd2b"
+git-tree-sha1 = "4b7aa3b9c51d1d9db74e2401dd1d1eaec416ee55"
 uuid = "20f20a25-4f0e-4fdf-b5d1-57303727442b"
-version = "0.8.6"
+version = "0.8.7"
 
 [[deps.ManualMemory]]
 git-tree-sha1 = "bcaef4fc7a0cfe2cba636d84cda54b5e4e4ca3cd"
@@ -1920,15 +1920,15 @@ version = "3.5.18"
 
 [[deps.Rmath]]
 deps = ["Random", "Rmath_jll"]
-git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b"
+git-tree-sha1 = "852bd0f55565a9e973fcfee83a84413270224dc4"
 uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa"
-version = "0.7.1"
+version = "0.8.0"
 
 [[deps.Rmath_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "e60724fd3beea548353984dc61c943ecddb0e29a"
+git-tree-sha1 = "58cdd8fb2201a6267e1db87ff148dd6c1dbd8ad8"
 uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f"
-version = "0.4.3+0"
+version = "0.5.1+0"
 
 [[deps.RoundingEmulator]]
 git-tree-sha1 = "40b9edad2e5287e05bd413a38f61a8ff55b9557b"
@@ -2161,9 +2161,9 @@ version = "0.34.3"
 
 [[deps.StatsFuns]]
 deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"]
-git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a"
+git-tree-sha1 = "b423576adc27097764a90e163157bcfc9acf0f46"
 uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c"
-version = "1.3.1"
+version = "1.3.2"
 weakdeps = ["ChainRulesCore", "InverseFunctions"]
 
     [deps.StatsFuns.extensions]

diff --git a/pluto-examples/flux-reconstruction.jl b/pluto-examples/flux-reconstruction.jl
@@ -301,7 +301,7 @@ Triangulate = "f7e6ffb2-c36d-4f8f-a77e-16e897189344"
 VoronoiFVM = "82b139dc-5afc-11e9-35da-9b9bdfd336f3"
 
 [compat]
-CairoMakie = "~0.12.9"
+CairoMakie = "~0.12.10"
 ExtendableGrids = "~1.9.2"
 GridVisualize = "~1.7.0"
 PlutoUI = "~0.7.60"
@@ -317,7 +317,7 @@ PLUTO_MANIFEST_TOML_CONTENTS = """
 
 julia_version = "1.10.5"
 manifest_format = "2.0"
-project_hash = "1ad5384bcf3f9c50fdd3a85bd760a8231c7a7cc2"
+project_hash = "4e77127dcf3019e4278e6cabcabaf427a0456d29"
 
 [[deps.ADTypes]]
 git-tree-sha1 = "99a6f5d0ce1c7c6afdb759daa30226f71c54f6b0"
@@ -531,9 +531,9 @@ version = "1.1.0"
 
 [[deps.CairoMakie]]
 deps = ["CRC32c", "Cairo", "Cairo_jll", "Colors", "FileIO", "FreeType", "GeometryBasics", "LinearAlgebra", "Makie", "PrecompileTools"]
-git-tree-sha1 = "361dec06290d76b6d70d0c7dc888038eec9df63a"
+git-tree-sha1 = "3443ecd9d38c1aeb2c6d0fa3a01598a59929da1d"
 uuid = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0"
-version = "0.12.9"
+version = "0.12.10"
 
 [[deps.Cairo_jll]]
 deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"]
@@ -1304,9 +1304,9 @@ version = "3.100.2+0"
 
 [[deps.LLVMOpenMP_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "e16271d212accd09d52ee0ae98956b8a05c4b626"
+git-tree-sha1 = "78211fb6cbc872f77cad3fc0b6cf647d923f4929"
 uuid = "1d63c593-3942-5779-bab2-d838dc0a180e"
-version = "17.0.6+0"
+version = "18.1.7+0"
 
 [[deps.LZO_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
@@ -1548,16 +1548,16 @@ uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09"
 version = "0.5.13"
 
 [[deps.Makie]]
-deps = ["Animations", "Base64", "CRC32c", "ColorBrewer", "ColorSchemes", "ColorTypes", "Colors", "Contour", "Dates", "DelaunayTriangulation", "Distributions", "DocStringExtensions", "Downloads", "FFMPEG_jll", "FileIO", "FilePaths", "FixedPointNumbers", "Format", "FreeType", "FreeTypeAbstraction", "GeometryBasics", "GridLayoutBase", "ImageIO", "InteractiveUtils", "IntervalSets", "Isoband", "KernelDensity", "LaTeXStrings", "LinearAlgebra", "MacroTools", "MakieCore", "Markdown", "MathTeXEngine", "Observables", "OffsetArrays", "Packing", "PlotUtils", "PolygonOps", "PrecompileTools", "Printf", "REPL", "Random", "RelocatableFolders", "Scratch", "ShaderAbstractions", "Showoff", "SignedDistanceFields", "SparseArrays", "Statistics", "StatsBase", "StatsFuns", "StructArrays", "TriplotBase", "UnicodeFun", "Unitful"]
-git-tree-sha1 = "204f06860af9008fa08b3a4842f48116e1209a2c"
+deps = ["Animations", "Base64", "CRC32c", "ColorBrewer", "ColorSchemes", "ColorTypes", "Colors", "Contour", "Dates", "DelaunayTriangulation", "Distributions", "DocStringExtensions", "Downloads", "FFMPEG_jll", "FileIO", "FilePaths", "FixedPointNumbers", "Format", "FreeType", "FreeTypeAbstraction", "GeometryBasics", "GridLayoutBase", "ImageBase", "ImageIO", "InteractiveUtils", "Interpolations", "IntervalSets", "Isoband", "KernelDensity", "LaTeXStrings", "LinearAlgebra", "MacroTools", "MakieCore", "Markdown", "MathTeXEngine", "Observables", "OffsetArrays", "Packing", "PlotUtils", "PolygonOps", "PrecompileTools", "Printf", "REPL", "Random", "RelocatableFolders", "Scratch", "ShaderAbstractions", "Showoff", "SignedDistanceFields", "SparseArrays", "Statistics", "StatsBase", "StatsFuns", "StructArrays", "TriplotBase", "UnicodeFun", "Unitful"]
+git-tree-sha1 = "768151abed75c6cf5be774456ae82bf9bb7274e9"
 uuid = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a"
-version = "0.21.9"
+version = "0.21.10"
 
 [[deps.MakieCore]]
 deps = ["ColorTypes", "GeometryBasics", "IntervalSets", "Observables"]
-git-tree-sha1 = "b0e2e3473af351011e598f9219afb521121edd2b"
+git-tree-sha1 = "4b7aa3b9c51d1d9db74e2401dd1d1eaec416ee55"
 uuid = "20f20a25-4f0e-4fdf-b5d1-57303727442b"
-version = "0.8.6"
+version = "0.8.7"
 
 [[deps.ManualMemory]]
 git-tree-sha1 = "bcaef4fc7a0cfe2cba636d84cda54b5e4e4ca3cd"
@@ -1938,15 +1938,15 @@ version = "3.5.18"
 
 [[deps.Rmath]]
 deps = ["Random", "Rmath_jll"]
-git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b"
+git-tree-sha1 = "852bd0f55565a9e973fcfee83a84413270224dc4"
 uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa"
-version = "0.7.1"
+version = "0.8.0"
 
 [[deps.Rmath_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "e60724fd3beea548353984dc61c943ecddb0e29a"
+git-tree-sha1 = "58cdd8fb2201a6267e1db87ff148dd6c1dbd8ad8"
 uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f"
-version = "0.4.3+0"
+version = "0.5.1+0"
 
 [[deps.RoundingEmulator]]
 git-tree-sha1 = "40b9edad2e5287e05bd413a38f61a8ff55b9557b"
@@ -2189,9 +2189,9 @@ version = "0.34.3"
 
 [[deps.StatsFuns]]
 deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"]
-git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a"
+git-tree-sha1 = "b423576adc27097764a90e163157bcfc9acf0f46"
 uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c"
-version = "1.3.1"
+version = "1.3.2"
 weakdeps = ["ChainRulesCore", "InverseFunctions"]
 
     [deps.StatsFuns.extensions]