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Issues list

Using NanoCaller with BED files and Indel Calling Gives Empty VCF files
#28 opened Jul 6, 2022 by hkarakurt8742
3
ValueError: invalid literal for int() with base 10: ''
#3 opened Jul 20, 2020 by MarleyCodes
1
Issue --end flag resquested in whole alignment Nanocaller
#5 opened Sep 9, 2020 by AG-Run
6
extract whole genome SNP and haplotype
#6 opened Sep 10, 2020 by qiang-huang
3
Not calling variant present in bam
#7 opened Oct 21, 2020 by Mailinnia
2
Upgrade model to tensorflow 2
#13 opened Jun 23, 2021 by Akazhiel
1
Runtime
#15 opened Jul 22, 2021 by Akazhiel
7
ONT Indel calling on polyploid plant
#20 opened Dec 22, 2021 by HenrivdGeest
Link to HiFi trained models
#22 opened Mar 2, 2022 by bbalog87
2
AttributeError: tuple object has no attribute ndims
#23 opened Mar 2, 2022 by bbalog87
1
index file .fai error
#25 opened Jun 7, 2022 by Meirom-Michal
2
NanoCaller for microbial genomes
#26 opened Jun 28, 2022 by rhinempi
usage information
#1 opened Apr 16, 2019 by kaichop
4
High coverage genotyping outputs only G
#27 opened Jun 28, 2022 by rhinempi
10
bcf tools error and error in whatshap
#29 opened Sep 1, 2022 by kprabhu-soundag
4
Models compatible with Guppy6.x.x
#31 opened Sep 21, 2022 by sagnikbanerjee15
1
Failed installation
#33 opened Nov 17, 2022 by twesigomwedavid
2
bam file issue!
#34 opened Jan 7, 2023 by g-s-2018
what do you want to fill in the “--chrom” option? I read the instructions and there is no document.
#35 opened Mar 17, 2023 by oranges7
22
header error in variant_calls.snps.phrased.vcf.gz
#36 opened Jun 23, 2023 by AzizHN
6
Unnormal results !
#37 opened Jun 27, 2023 by AzizHN
8
conda install incompatibilities
#41 opened Oct 24, 2023 by jannafierst
4
Module not found tqtm after install with conda
#43 opened Mar 21, 2024 by RxLoutre
1
Applications
#45 opened May 2, 2024 by QuentinPerriere
12
Reduced coverage in vcf
#55 opened Feb 14, 2025 by bariceta
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