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@WGLab

Wang Genomics Lab

We develop software tools for genome analysis

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  1. doc-ANNOVAR doc-ANNOVAR Public

    Documentation for the ANNOVAR software

    236 372

  2. InterVar InterVar Public

    A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline

    Python 190 93

  3. dragonstar2019 dragonstar2019 Public

    135 97

  4. NanoCaller NanoCaller Public

    Variant calling tool for long-read sequencing data

    Python 102 8

  5. DeepMod DeepMod Public

    DeepMod: a deep-learning tool for genomic-scale, strand-sensitive and single-nucleotide based detection of DNA modifications

    Python 101 35

  6. PennCNV PennCNV Public

    Copy number vaiation detection from SNP arrays

    C 89 55

Repositories

Showing 10 of 81 repositories
  • ContextSV Public

    An alignment-based, generalized structural variant caller for long-read sequencing/mapping data

    WGLab/ContextSV’s past year of commit activity
    C++ 2 MIT 0 5 0 Updated Feb 1, 2025
  • NanoCaller Public

    Variant calling tool for long-read sequencing data

    WGLab/NanoCaller’s past year of commit activity
    Python 102 MIT 8 31 0 Updated Jan 30, 2025
  • LongReadSum Public
    WGLab/LongReadSum’s past year of commit activity
    C++ 14 MIT 3 5 0 Updated Jan 26, 2025
  • LinkedSV Public
    WGLab/LinkedSV’s past year of commit activity
    C 21 MIT 9 15 0 Updated Jan 21, 2025
  • SCOTCH Public

    Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single-cell RNA sequencing

    WGLab/SCOTCH’s past year of commit activity
    Python 6 MIT 0 4 0 Updated Jan 17, 2025
  • DeepMod2 Public

    DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads

    WGLab/DeepMod2’s past year of commit activity
    Jupyter Notebook 40 MIT 2 13 0 Updated Jan 17, 2025
  • LIQA Public

    Long-read Isoform Quantification and Analysis

    WGLab/LIQA’s past year of commit activity
    Python 39 13 0 0 Updated Jan 7, 2025
  • PhenoGPT Public
    WGLab/PhenoGPT’s past year of commit activity
    Jupyter Notebook 20 MIT 6 2 0 Updated Dec 13, 2024
  • PhenoSV Public

    PhenoSV: Interpretable phenotype-aware model for the prioritization of genes affected by structural variants.

    WGLab/PhenoSV’s past year of commit activity
    Python 16 MIT 4 2 0 Updated Dec 12, 2024
  • NanoRepeat Public

    NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data

    WGLab/NanoRepeat’s past year of commit activity
    Python 18 MIT 1 4 0 Updated Dec 6, 2024
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