WFP-VAM · AlexGherardelli · Aug 1, 2024 · Aug 1, 2024
diff --git a/Indicators/Nutrition-CRF-7-coverage/nut7_coverage.do b/Indicators/Nutrition-CRF-7-coverage/nut7_coverage.do
@@ -0,0 +1,23 @@
+*------------------------------------------------------------------------------*
+*                          WFP Standardized Scripts
+*                         NUT7 Coverage Indicator
+*------------------------------------------------------------------------------*
+
+* Note: This syntax file processes the NUT7 coverage indicator by assessing 
+* participant enrollment in a specified nutrition program.
+
+* Can only download repeat CSV data as a zip file from MODA with group names.
+* Will update this code to remove group names.
+
+* Rename to remove group names.
+rename Nutrition_moduleNutProg_submoduleRepeatNutProgPNutProgPartic PNutProgPartic_yn
+
+* Define variable and value labels.
+label variable PNutProgPartic_yn "Is participant enrolled in the ((insert name/description of program, to be adapted locally)) programme?"
+label define PNutProgPartic_yn_label 0 "No" 1 "Yes"
+label values PNutProgPartic_yn PNutProgPartic_yn_label
+
+* Frequency table for PNutProgPartic_yn.
+tabulate PNutProgPartic_yn
+
+* End of Scripts.
diff --git a/Indicators/Nutrition-CRF-7-coverage/nut7_coverage.py b/Indicators/Nutrition-CRF-7-coverage/nut7_coverage.py
@@ -0,0 +1,29 @@
+#------------------------------------------------------------------------------#
+#                          WFP Standardized Scripts
+#                         NUT7 Coverage Indicator
+#------------------------------------------------------------------------------#
+
+# Note: This script processes the NUT7 coverage indicator by assessing participant 
+# enrollment in a specified nutrition program.
+
+import pandas as pd
+import numpy as np
+
+# Add sample data.
+#data = pd.read_csv("~/GitHub/RAMResourcesScripts/Static/Nut_CRF_7_coverage_Sample_Survey/Nutrition_module_NutProg_submodule_RepeatNutProg.csv")
+
+# Can only download repeat CSV data as a zip file from MODA with group names.
+# Rename to remove group names.
+data = data.rename(columns={'Nutrition_module/NutProg_submodule/RepeatNutProg/PNutProgPartic_yn': 'PNutProgPartic_yn'})
+
+# Assign variable and value labels.
+data['PNutProgPartic_yn'] = data['PNutProgPartic_yn'].astype('category')
+data['PNutProgPartic_yn'].cat.categories = ["No", "Yes"]
+data['PNutProgPartic_yn'].cat.set_categories([0, 1], rename=True, inplace=True)
+
+# Create a table of the weighted percentage of NutProgPartic_yn.
+nut_prog_partic_yn_table = data['PNutProgPartic_yn'].value_counts(normalize=True).reset_index()
+nut_prog_partic_yn_table.columns = ['PNutProgPartic_yn', 'Percentage']
+nut_prog_partic_yn_table['Percentage'] = nut_prog_partic_yn_table['Percentage'] * 100
+
+# End of Scripts.
diff --git a/Indicators/Nutrition-CRF-7-coverage/nut7_coverage.sps b/Indicators/Nutrition-CRF-7-coverage/nut7_coverage.sps
@@ -1,15 +1,25 @@
-* Encoding: UTF-8.
+********************************************************************************
+*                          WFP Standardized Scripts
+*                         NUT7 Coverage Indicator
+********************************************************************************
 
-*can only download repeat csv data as zip file from moda with group names - will update this code to remove group names
-*rename to remove group names - because of the variable length SPSS changes name slightly
+* Note: This syntax file processes the NUT7 coverage indicator by assessing 
+* participant enrollment in a specified nutrition program. 
+
+* Define variable and value labels.
+
+* Can only download repeat CSV data as a zip file from MODA with group names.
+* Will update this code to remove group names.
 
 RENAME VARIABLES (Nutrition_moduleNutProg_submoduleRepeatNutProgPNutProgPartic = PNutProgPartic_yn).
 
-* define variable and value labels
+* Define variable and value labels.
 
-Variable labels PNutProgPartic_yn ‘Is participant enrolled in the ((insert name/description  of program, to be adapted locally)) programme?’.
+VARIABLE LABELS PNutProgPartic_yn 'Is participant enrolled in the ((insert name/description of program, to be adapted locally)) programme?'.
 
-Value labels PNutProgPartic_ynNutProgPartic_yn 1 'Yes' 0  'No '.
+VALUE LABELS PNutProgPartic_yn 1 'Yes' 0 'No'.
 
-freq PNutProgPartic_yn.
+* Frequency table for PNutProgPartic_yn.
+FREQUENCIES VARIABLES=PNutProgPartic_yn.
 
+* End of Scripts.
diff --git a/Indicators/Nutrition-CRF-7-coverage/nut7_coverage_tidyverse.R b/Indicators/Nutrition-CRF-7-coverage/nut7_coverage_tidyverse.R
@@ -1,34 +1,38 @@
+#------------------------------------------------------------------------------#
+#                          WFP Standardized Scripts
+#                         NUT7 Coverage Indicator
+#------------------------------------------------------------------------------#
+
+# Note: This script processes the NUT7 coverage indicator by assessing participant 
+# enrollment in a specified nutrition program.
+
 library(tidyverse)
 library(labelled)
 library(expss)
 
-#add sample data
-data <- read_csv("~/GitHub/RAMResourcesScripts/Static/Nut_CRF_7_coverage_Sample_Survey/Nutrition_module_NutProg_submodule_RepeatNutProg.csv")
+# Add sample data.
+#data <- read_csv("~/GitHub/RAMResourcesScripts/Static/Nut_CRF_7_coverage_Sample_Survey/Nutrition_module_NutProg_submodule_RepeatNutProg.csv")
 
-#can only download repeat csv data as zip file from moda with group names - will update this code to remove group names
-#rename to remove group names
+# Can only download repeat CSV data as a zip file from MODA with group names.
+# Rename to remove group names.
 data <- data %>% rename(PNutProgPartic_yn = 'Nutrition_module/NutProg_submodule/RepeatNutProg/PNutProgPartic_yn')
 
-
-#assign variable and value labels
-var_label(data$PNutProgPartic_yn) <- "Is participant enrolled in the ((insert name/description  of program, to be adapted locally)) programme?"
+# Assign variable and value labels.
+var_label(data$PNutProgPartic_yn) <- "Is participant enrolled in the ((insert name/description of program, to be adapted locally)) programme?"
 val_lab(data$PNutProgPartic_yn) = num_lab("
              0 No
              1 Yes
 ")
 
-
-#creates a table of the weighted percentage of NutProgPartic_yn by
-#creating a temporary variable to display value labels 
-#and providing the option to use weights if needed
-
-
-NutProgPartic_yn_table_wide <- data %>% 
+# Create a table of the weighted percentage of NutProgPartic_yn.
+NutProgPartic_yn_table_wide <- data %>%
   drop_na(PNutProgPartic_yn) %>%
-  count(PNutProgPartic_yn_lab = as.character(PNutProgPartic_yn)) %>% # if weights are needed use instead the row below 
-  #count(PNutProgPartic_yn_lab = as.character(PNutProgPartic_yn), wt = nameofweightvariable)
+  count(PNutProgPartic_yn_lab = as.character(PNutProgPartic_yn)) %>%
+  # Use the line below if weights are needed.
+  # count(PNutProgPartic_yn_lab = as.character(PNutProgPartic_yn), wt = nameofweightvariable)
   mutate(Percentage = 100 * n / sum(n)) %>%
-  ungroup() %>% select(-n) %>%
-  pivot_wider(names_from = PNutProgPartic_yn_lab,
-              values_from = Percentage,
-              values_fill =  0) 
+  ungroup() %>%
+  select(-n) %>%
+  pivot_wider(names_from = PNutProgPartic_yn_lab, values_from = Percentage, values_fill = 0)
+
+# End of Scripts.
diff --git a/Indicators/Nutrition-CRF-8-adherence/nut8_adherence.do b/Indicators/Nutrition-CRF-8-adherence/nut8_adherence.do
@@ -1,29 +1,41 @@
-*add sample data
-import delimited using "../../Static/Nut_CRF_8_adherence_Sample_Survey/Nutrition_module_NutProg_submodule_RepeatNutProg.csv"
+*------------------------------------------------------------------------------*
+*                          WFP Standardized Scripts
+*                         NUT8 Adherence Indicator
+*------------------------------------------------------------------------------*
 
+* Note: This syntax file processes the NUT8 adherence indicator by assessing 
+* whether participants received an adequate number of distributions as per 
+* program requirements.
 
-rename (v2 v3 v4 v5 v6 v7 v8 v9 v10 v11 v12 v13) (PNutProgParticName PNutProgCard PNutProgShouldNbrCard PNutProgDidNbrCard PNutwhendate PNutProgShouldNbrNoCard PNutProgDidNbrNoCard PNutProgEntitlements PNoNutProgReason PNoNutProgReason_other PNoNutProgCardReason PNoNutProgCardReason_other)
-*#assign variable labels 
+* Can only download repeat CSV data as a zip file from MODA with group names.
+* Will update this code to remove group names.
 
-label var PNutProgCard "May I see participant's program participation card?"
-label var PNutProgShouldNbrCard "number of distributions entitled to - measured with participation card"
-label var PNutProgDidNbrCard "number of distributions received - measured with participation card"
-label var PNutProgShouldNbrNoCard "number of distributions entitled to - measured without participation card"
-label var PNutProgDidNbrNoCard "number of distributions received - measured without participation card"
-label define Yesno 1 "Yes" 0 "No"
-
-*#create variable which classifies if participant received 66% or more of planned distributions 
-gen NutProgRecAdequate=cond((PNutProgCard == 1 & ((PNutProgDidNbrCard / PNutProgShouldNbrCard) >= .66) == 1) | ///
-  (PNutProgCard == 0 & ((PNutProgDidNbrNoCard / PNutProgShouldNbrNoCard) >= .66) == 1),1,0)
-label var NutProgRecAdequate "Participant recieved adequate number of distributions?"
+* Add sample data.
+*import delimited using "~/GitHub/RAMResourcesScripts/Static/Nut_CRF_8_adherence_Sample_Survey/Nutrition_module_NutProg_submodule_RepeatNutProg.csv"
 
+* Rename to remove group names.
+rename Nutrition_moduleNutProg_submoduleRepeatNutProgPNutProgCard       PNutProgCard
+rename Nutrition_moduleNutProg_submoduleRepeatNutProgPNutProgShouldN_A  PNutProgShouldNbrCard
+rename Nutrition_moduleNutProg_submoduleRepeatNutProgPNutProgDidNbrC    PNutProgDidNbrCard
+rename Nutrition_moduleNutProg_submoduleRepeatNutProgPNutProgShouldN    PNutProgShouldNbrNoCard
+rename Nutrition_moduleNutProg_submoduleRepeatNutProgPNutProgDidNbrN    PNutProgDidNbrNoCard
 
+* Define variable and value labels.
+label variable PNutProgCard            "May I see participant's program participation card?"
+label variable PNutProgShouldNbrCard   "Number of distributions entitled to - measured with participation card"
+label variable PNutProgDidNbrCard      "Number of distributions received - measured with participation card"
+label variable PNutProgShouldNbrNoCard "Number of distributions entitled to - measured without participation card"
+label variable PNutProgDidNbrNoCard    "Number of distributions received - measured without participation card"
+label define Yesno 1 "Yes" 0 "No"
 label values PNutProgCard NutProgRecAdequate Yesno
 
-/*
-#creates a table of the weighted percentage of NutProgRecAdequate by
-#creating a temporary variable to display value labels 
-#and providing the option to use weights if needed
-*/
-cap gen WeightHH=1
+* Create variable which classifies if participant received 66% or more of planned distributions.
+gen NutProgRecAdequate = cond((PNutProgCard == 1 & ((PNutProgDidNbrCard / PNutProgShouldNbrCard) >= .66)) | ///
+  (PNutProgCard == 0 & ((PNutProgDidNbrNoCard / PNutProgShouldNbrNoCard) >= .66)), 1, 0)
+label variable NutProgRecAdequate "Participant received adequate number of distributions?"
+
+* Create a table of the weighted percentage of NutProgRecAdequate.
+cap gen WeightHH = 1
 tabulate NutProgRecAdequate [aw=WeightHH]
+
+* End of Scripts.
diff --git a/Indicators/Nutrition-CRF-8-adherence/nut8_adherence.py b/Indicators/Nutrition-CRF-8-adherence/nut8_adherence.py
@@ -0,0 +1,47 @@
+#------------------------------------------------------------------------------#
+#                          WFP Standardized Scripts
+#                         NUT8 Adherence Indicator
+#------------------------------------------------------------------------------#
+
+# Note: This script processes the NUT8 adherence indicator by assessing 
+# whether participants received an adequate number of distributions as per 
+# program requirements.
+
+import pandas as pd
+import numpy as np
+
+# Add sample data
+#data = pd.read_csv("~/GitHub/RAMResourcesScripts/Static/Nut_CRF_8_adherence_Sample_Survey/Nutrition_module_NutProg_submodule_RepeatNutProg.csv")
+
+# Can only download repeat CSV data as a zip file from MODA with group names.
+# Rename to remove group names.
+data = data.rename(columns={
+    'Nutrition_module/NutProg_submodule/RepeatNutProg/PNutProgCard': 'PNutProgCard',
+    'Nutrition_module/NutProg_submodule/RepeatNutProg/PNutProgShouldNbrCard': 'PNutProgShouldNbrCard',
+    'Nutrition_module/NutProg_submodule/RepeatNutProg/PNutProgDidNbrCard': 'PNutProgDidNbrCard',
+    'Nutrition_module/NutProg_submodule/RepeatNutProg/PNutProgShouldNbrNoCard': 'PNutProgShouldNbrNoCard',
+    'Nutrition_module/NutProg_submodule/RepeatNutProg/PNutProgDidNbrNoCard': 'PNutProgDidNbrNoCard'
+})
+
+# Assign variable and value labels.
+data['PNutProgCard'] = data['PNutProgCard'].astype('category')
+data['PNutProgCard'].cat.rename_categories({0: 'No', 1: 'Yes'}, inplace=True)
+
+# Create variable which classifies if participant received 66% or more of planned distributions.
+data['NutProgRecAdequate'] = np.where(
+    (data['PNutProgCard'] == 'Yes') & ((data['PNutProgDidNbrCard'] / data['PNutProgShouldNbrCard']) >= 0.66) |
+    (data['PNutProgCard'] == 'No') & ((data['PNutProgDidNbrNoCard'] / data['PNutProgShouldNbrNoCard']) >= 0.66),
+    1, 0
+)
+data['NutProgRecAdequate'] = data['NutProgRecAdequate'].astype('category')
+data['NutProgRecAdequate'].cat.rename_categories({0: 'No', 1: 'Yes'}, inplace=True)
+
+# Create a table of the weighted percentage of NutProgRecAdequate.
+nutprog_table = data['NutProgRecAdequate'].value_counts(normalize=True).reset_index()
+nutprog_table.columns = ['NutProgRecAdequate', 'Percentage']
+nutprog_table['Percentage'] *= 100
+
+# Print the table.
+print(nutprog_table)
+
+# End of Scripts.
diff --git a/Indicators/Nutrition-CRF-8-adherence/nut8_adherence.sps b/Indicators/Nutrition-CRF-8-adherence/nut8_adherence.sps
@@ -1,34 +1,42 @@
-* Encoding: UTF-8.
+********************************************************************************
+*                          WFP Standardized Scripts
+*                         NUT8 Adherence Indicator
+********************************************************************************
 
-*can only download repeat csv data as zip file from moda with group names - will update this code to remove group names
-*rename to remove group names - because of the variable length SPSS truncates name
+* Note: This syntax file processes the NUT8 adherence indicator by assessing 
+* whether participants received an adequate number of distributions as per 
+* program requirements.
 
-RENAME VARIABLES (Nutrition_moduleNutProg_submoduleRepeatNutProgPNutProgCard = PNutProgCard).
-RENAME VARIABLES (Nutrition_moduleNutProg_submoduleRepeatNutProgPNutProgShouldN_A = PNutProgShouldNbrCard).
-RENAME VARIABLES (Nutrition_moduleNutProg_submoduleRepeatNutProgPNutProgDidNbrC = PNutProgDidNbrCard).
-RENAME VARIABLES (Nutrition_moduleNutProg_submoduleRepeatNutProgPNutProgShouldN = PNutProgShouldNbrNoCard).
-RENAME VARIABLES (Nutrition_moduleNutProg_submoduleRepeatNutProgPNutProgDidNbrN = PNutProgDidNbrNoCard).
-
-* define variable and value labels
+* Can only download repeat CSV data as a zip file from MODA with group names.
+* Will update this code to remove group names.
 
-Variable labels PNutProgCard "May I see participant's program participation card?".
-Variable labels PNutProgShouldNbrCard 'number of distributions entitled to - measured with participation card'.
-Variable labels PNutProgDidNbrCard 'number of distributions received - measured with participation card'.
-Variable labels PNutProgShouldNbrNoCard 'number of distributions entitled to - measured without participation card'.
-Variable labels PNutProgDidNbrNoCard 'number of distributions received - measured without participation card'.
+* Rename to remove group names.
+RENAME VARIABLES (Nutrition_moduleNutProg_submoduleRepeatNutProgPNutProgCard      = PNutProgCard).
+RENAME VARIABLES (Nutrition_moduleNutProg_submoduleRepeatNutProgPNutProgShouldN_A = PNutProgShouldNbrCard).
+RENAME VARIABLES (Nutrition_moduleNutProg_submoduleRepeatNutProgPNutProgDidNbrC   = PNutProgDidNbrCard).
+RENAME VARIABLES (Nutrition_moduleNutProg_submoduleRepeatNutProgPNutProgShouldN   = PNutProgShouldNbrNoCard).
+RENAME VARIABLES (Nutrition_moduleNutProg_submoduleRepeatNutProgPNutProgDidNbrN   = PNutProgDidNbrNoCard).
 
-Value labels PNutProgCard 1 'Yes' 0  'No '.
+* Define variable and value labels.
+VARIABLE LABELS PNutProgCard             "May I see participant's program participation card?".
+VARIABLE LABELS PNutProgShouldNbrCard    "Number of distributions entitled to - measured with participation card".
+VARIABLE LABELS PNutProgDidNbrCard       "Number of distributions received - measured with participation card".
+VARIABLE LABELS PNutProgShouldNbrNoCard  "Number of distributions entitled to - measured without participation card".
+VARIABLE LABELS PNutProgDidNbrNoCard     "Number of distributions received - measured without participation card".
 
-*create variable which classifies if participant received 66% or more of planned distributions 
+VALUE LABELS PNutProgCard 1 'Yes' 0 'No'.
 
-do if ((PNutProgCard = 1) & ((PNutProgDidNbrCard / PNutProgShouldNbrCard) >= .66)) OR ((PNutProgCard = 0) & ((PNutProgDidNbrNoCard / PNutProgShouldNbrNoCard) >= .66)) . 
-compute NutProgRecAdequate = 1.
-Else.
-Compute NutProgRecAdequate = 0.
-End if.
+* Create variable which classifies if participant received 66% or more of planned distributions.
+DO IF ((PNutProgCard = 1) & ((PNutProgDidNbrCard / PNutProgShouldNbrCard) >= .66)) OR ((PNutProgCard = 0) & ((PNutProgDidNbrNoCard / PNutProgShouldNbrNoCard) >= .66)).
+    COMPUTE NutProgRecAdequate = 1.
+ELSE.
+    COMPUTE NutProgRecAdequate = 0.
+END IF.
 
-Variable labels PNutProgDidNbrNoCard "Participant recieved adequate number of distributions?".
-Value labels NutProgRecAdequate 1 'Yes' 0  'No '.
+VARIABLE LABELS NutProgRecAdequate "Participant received adequate number of distributions?".
+VALUE LABELS NutProgRecAdequate 1 'Yes' 0 'No'.
 
-freq NutProgRecAdequate.
+* Frequency table for NutProgRecAdequate.
+FREQUENCIES VARIABLES=NutProgRecAdequate.
 
+* End of Scripts.