fixed matrix rotation for heatmap #95
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| name: test and build | ||
| on: | ||
| pull_request: | ||
| types: [ labeled ] # turn off CI/CD for now | ||
| branches: | ||
| - main | ||
| push: | ||
| jobs: | ||
| if: ${{ github.event.label.name == 'bug' }} # turn off CI/CD for now | ||
| lint: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/checkout@v2 | ||
| - name: set up python 3.8 | ||
| uses: actions/setup-python@v1 | ||
| with: | ||
| python-version: 3.8 | ||
| - name: install dependencies | ||
| run: pip install -q flake8 | ||
| - name: lint | ||
| run: flake8 | ||
| build-and-test: | ||
| needs: [lint] | ||
| strategy: | ||
| matrix: | ||
| os: [ubuntu-latest, macos-latest] | ||
| runs-on: ${{ matrix.os }} | ||
| steps: | ||
| - uses: actions/checkout@v2 | ||
| with: | ||
| # necessary for versioneer | ||
| fetch-depth: 0 | ||
| - name: Hack - template coverage output path | ||
| run: echo "COV=coverage xml -o $GITHUB_WORKSPACE/coverage.xml" >> $GITHUB_ENV | ||
| - uses: qiime2/action-library-packaging@alpha1 | ||
| with: | ||
| package-name: q2-gglasso | ||
| additional-tests: ${{ env.COV }} | ||
| build-target: dev | ||
| library-token: ${{ secrets.LIBRARY_TOKEN }} | ||
| - name: Upload coverage to Codecov | ||
| uses: codecov/codecov-action@v2 | ||
| with: | ||
| fail_ci_if_error: true | ||
