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Update README.md
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dbirman authored Jan 13, 2022
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Expand Up @@ -57,17 +57,29 @@ Clicking on the coordinates shown at the bottom of the screen copies them to the
## Settings

**Reset active probe** - Returns the active probe to the original starting position (Bregma by default)

**Spawn IBL probes** - Places two NP1.0 probes in the configuration used by the IBL

**Probe collisions** - Prevents probe shanks and holders from intersecting when moved

**Set (0,0,0) to Bregma** - On: smpets the 0,0,0 coordinate to Bregma, or to the 0,0,0 CCF coordinate when unchecked (default: on)

**Depth from brain surface** - On: measures insertion depth from the brain surface, Off: from the DV=0 plane (default: on)

**Sagittal/Coronal slices** - On: displays slices aligned to the probe tip (default: off)

**Display area acronyms** - On: show only acronyms for brain areas (default: off)

**Areas include layers** - On: include the layers (e.g. in cortex) (default: on)

**Rig** - Dropdown with options for rigs to display

**Recording region only** - On: display only the areas within the recording region, Off: show the areas along the whole probe shank (default: on)

**Recording region size** - Slider controls the size of the recording region. Defaults to a set of options that depend on the probe.

**Display In-Plane Slice** - On: shows a slice of cortex that is "in-plane" with the probe, note that this uses a camera that is looking at the probe from the front of the brain towards the back (default: on)

**Convert AP/ML to probe** - On: when the probe manipulator is off of the 0/90 axis the AP/ML positions are not useful for calculating the insertion point relative to Bregma, turn this on to display the position along the probe forward/side axes (default: off)

## Bugs
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