Introducing a CLI and Gradle Support

What's Changed

• Use user input filename for analysis by @Kit-p in #85
• Format code with autopep8 and google-java-format by @deepsource-autofix in #86
• Test DNA From GDV by @Verisimilitude11 in #87
• Create codeql-analysis.yml by @Verisimilitude11 in #88
• Format code with autopep8 and google-java-format by @deepsource-autofix in #89
• added Contributing_Guidelines.md file by @sumitbishti in #92
• Update ProteinFinder.java by @aakash232 in #93
• resolves #90: added and update java docs by @iamHrithikRaj in #100
• Refactor for Utility classes - Issue #84 by @B4CKF1SH in #98
• resolves #80: Refactor CoreExecutor.createProteinList(String,String) by @iamHrithikRaj in #101
• Fixed formatting inconsistencies by @Verisimilitude11 in #102
• Refactor CodonData class #69 by @shubhwip in #94
• Revert "Refactor CodonData class #69" by @Verisimilitude11 in #110
• Separate constants from static functions by @shubhwip in #109
• Refactor ProteinFinder.getProtein with many args by @shubhwip in #99
• Refactor ReadingFrames constructor by @shubhwip in #111
• added min and max count User input at beginning of program. by @Lumary2 in #113
• Format code with autopep8 and google-java-format by @deepsource-autofix in #114
• Get ReadingFrame from user input by @klurpicolo in #115
• #74 refactoring of Properties.countNucleotides method by @Speedro in #116
• Refactor getAminoAcid method with reduced branches by @androlover98 in #118
• Fixed broken link for DNA Generator by @Verisimilitude11 in #120
• Format code with autopep8 and google-java-format by @deepsource-autofix in #119
• Refactor getAminoAcid by @shubhwip in #112
• Format code with autopep8 and google-java-format by @deepsource-autofix in #124
• resolves #68 : updated README.md by @iamHrithikRaj in #127
• Closes #128 : handled infinite loop when file-path is incorrect by @iamHrithikRaj in #129
• Switch to picocli by @Nv7-GitHub in #123
• Move CoreExecutor code into CmdArgs by @Nv7-GitHub in #155
• Protein finding by @Nv7-GitHub in #158
• Format code with autopep8 and google-java-format by @deepsource-autofix in #159
• Reformatted by @Verisimilitude11 in #163
• Updates readme to include cli by @aminisonya in #162
• Fix #95: added code conventions by @sumitbishti in #161
• Configure Gradle build. Implements #117. by @frankschmitt in #125
• Make compile work + picocli as external dependency + fat jar by @Nv7-GitHub in #164
• Format code with autopep8 and google-java-format by @deepsource-autofix in #166
• Document the CmdArgs class, resolves #169 by @bufutda in #172
• Format code with autopep8 and google-java-format by @deepsource-autofix in #174
• Reverse option by @Nv7-GitHub in #167
• Format code with autopep8 and google-java-format by @deepsource-autofix in #177
• Adding Gradle instructions in Read Me by @Saket2 in #175
• removed instantiation of class with only static methods by @AbbasSalloum in #171
• Updated contributors in main readme.md by @sb-decoder in #180
• Added inline video, removed markdown by @zackrhodes86 in #192
• Format code with autopep8 and google-java-format by @deepsource-autofix in #179

New Contributors

• @Kit-p made their first contribution in #85
• @sumitbishti made their first contribution in #92
• @aakash232 made their first contribution in #93
• @iamHrithikRaj made their first contribution in #100
• @B4CKF1SH made their first contribution in #98
• @shubhwip made their first contribution in #94
• @Lumary2 made their first contribution in #113
• @klurpicolo made their first contribution in #115
• @Speedro made their first contribution in #116
• @androlover98 made their first contribution in #118
• @Nv7-GitHub made their first contribution in #123
• @aminisonya made their first contribution in #162
• @frankschmitt made their first contribution in #125
• @bufutda made their first contribution in #172
• @Saket2 made their first contribution in #175
• @AbbasSalloum made their first contribution in #171
• @sb-decoder made their first contribution in #180
• @zackrhodes86 made their first contribution in #192

Full Changelog: v1.2.2...v2.0.0