float

VUIIS · Apr 12, 2024 · c70c32a · c70c32a
1 parent 55cb64b
commit c70c32a
Show file tree

Hide file tree

Showing 2 changed files with 5 additions and 1 deletion.
diff --git a/src/create_json.py b/src/create_json.py
@@ -21,7 +21,7 @@
 tr = nii.header['pixdim'][4]
 
 # fmriprep minimum needed fields
-json_data['RepetitionTime'] = f'{tr}'
+json_data['RepetitionTime'] = float(tr)
 
 ## Slice timing
 # Assumes slices are evenly spaced in the TR (i.e. not a sparse

diff --git a/src/fmriprep-prep-nojson.sh b/src/fmriprep-prep-nojson.sh
@@ -56,6 +56,10 @@ if [ "${slicetiming}" = "ABIDE" ]; then
     export slicetiming=$(slicetiming_ABIDE.py --subject_label "${sub}")
 fi
 
+# If subject, session have _, drop it because it's not compatible with BIDS
+# file naming
+sub=${sub//_/}
+ses=${ses//_/}
 
 # Rename and relocate files according to bids scheme