updated the Docker and Github container registery deploy action. Both…

…e AVX and No AVX images now containe the webapp, I dropped the third separate webapp container. Updated the max file upload size of the webapp to 5GB.

.github/workflows/docker_ghcr_io.yml

@@ -1,44 +1,41 @@
-name: Publish Docker image
+name: Publish Docker images
+
 on:
-  release:
-    branches: main
+  push:
+    branches:
+      - 'main'
 
 jobs:
-  build-and-push-image:
+  docker:
     runs-on: ubuntu-latest
-
     steps:
-    - name: Checkout
-      uses: actions/checkout@v2
-
-    - name: Get short SHA
-      id: slug
-      run: echo "::set-output name=sha12::$(echo ${GITHUB_SHA} | cut -c1-12)"
-
-    - name: Login to GitHub Container Registry
-      uses: docker/login-action@v1
-      with:
-        registry: ghcr.io
-        username: ${{ github.repository_owner }}
-        password: ${{ secrets.MY_GITHUB_RESISTRY_TOKEN }}
-
-    - name: Build AVX container image and push to ghcr
-      uses: docker/build-push-action@v2
-      with:
-        context: docker-images/avx
-        push: true
-        tags: ghcr.io/usda-ars-gbru/guidemaker-avx:sha-${{ steps.slug.outputs.sha12 }}
-
-    - name: Build NON-AVX container image and push to ghcr
-      uses: docker/build-push-action@v2
-      with:
-        context: docker-images/nonavx
-        push: true
-        tags: ghcr.io/usda-ars-gbru/guidemaker-nonavx:sha-${{ steps.slug.outputs.sha12 }}
-
-    - name: Build WEBAPP container image and push to ghcr
-      uses: docker/build-push-action@v2
-      with:
-        context: docker-images/webapp
-        push: true
-        tags: ghcr.io/usda-ars-gbru/guidemaker-webapp:sha-${{ steps.slug.outputs.sha12 }}
+      -
+        name: Set up QEMU
+        uses: docker/setup-qemu-action@v3
+      -
+        name: Set up Docker Buildx
+        uses: docker/setup-buildx-action@v3
+      -
+        name: Login to Github Container Registry
+        uses: docker/login-action@v3
+        with:
+          registry: ghcr.io
+          username: ${{ github.actor }}
+          password: ${{ secrets.GITHUB_TOKEN }}
+      - name: Get short SHA
+        id: slug
+        run: echo "::set-output name=sha12::$(echo ${GITHUB_SHA} | cut -c1-12)"
+      -
+        name: Build and push AVX version of guidemaker
+        uses: docker/build-push-action@v5
+        with:
+          context: docker-images/webapp
+          push: true
+          tags: ghcr.io/usda-ars-gbru/guidemaker-webapp:sha-${{ steps.slug.outputs.sha12 }}
+      -
+        name: Build and push noavx version of guidemaker
+        uses: docker/build-push-action@v5
+        with:
+          context: docker-images/noavx
+          push: true
+          tags: ghcr.io/usda-ars-gbru/guidemaker-noavx:sha-${{ steps.slug.outputs.sha12 }}

docker-images/webapp/Dockerfile → docker-images/avx/Dockerfile

@@ -34,4 +34,4 @@ RUN cp GuideMaker/guidemaker/data/Pseudomonas_aeruginosa.gbk.gz .
 RUN cp GuideMaker/guidemaker/data/Carsonella_ruddii.gbk.gz .
 
 # run web app
-CMD streamlit run GuideMaker/guidemaker/data/app.py --server.maxUploadSize 500
+CMD streamlit run GuideMaker/guidemaker/data/app.py --server.maxUploadSize 5000

docker-images/nonavx/Dockerfile

@@ -13,10 +13,10 @@ ARG MAMBA_DOCKERFILE_ACTIVATE=1
 
 USER root
 RUN apt-get update && apt-get install -y --no-install-recommends \
-    build-essential \
-    python3-dev \
-    zlib1g-dev \
-    git && apt-get clean \
+    build-essential=12.9 \
+    python3-dev=3.9 \
+    zlib1g-dev=1.2 \
+    git=2.30 && apt-get clean \
  && rm -rf /var/lib/apt/lists/*
 USER $MAMBA_USER
 
@@ -34,4 +34,4 @@ RUN cp GuideMaker/guidemaker/data/Pseudomonas_aeruginosa.gbk.gz .
 RUN cp GuideMaker/guidemaker/data/Carsonella_ruddii.gbk.gz .
 
 # run web app
-CMD streamlit run GuideMaker/guidemaker/data/app.py --server.maxUploadSize 500
+CMD streamlit run GuideMaker/guidemaker/data/app.py --server.maxUploadSize 5000