Adding figures

USCCANA · Mar 30, 2016 · 562afb9 · 562afb9
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diff --git a/README.Rmd b/README.Rmd
@@ -104,7 +104,7 @@ out <- plot_infectsuscep(diffnet, bins = 20,K=5, logscale = FALSE, exclude.zeros
 
 ### Threshold
 
-```{r, plot_threshold, fig.height=7}
+```{r BoringThreshold, plot_threshold, fig.height=7}
 # Generating a random graph
 set.seed(123)
 diffnet <- rdiffnet(500, 20,
@@ -120,7 +120,7 @@ plot_threshold(diffnet, vertex.cex = "degree")
 
 Using more features
 
-```{r}
+```{r NiceThreshold}
 data("medInnovationsDiffNet")
 size <- sqrt(1 + dgr(medInnovationsDiffNet)[,1])
 set.seed(131)
@@ -138,14 +138,14 @@ plot_threshold(
 
 ### Adoption rate
 
-```{r}
+```{r Adopters}
 plot_adopters(diffnet)
 ```
 
 
 ### Hazard rate
 
-```{r}
+```{r Hazard}
 hazard_rate(diffnet)
 ```
 

diff --git a/README.md b/README.md
@@ -163,29 +163,48 @@ diffnet
 plot_threshold(diffnet, vertex.cex = .25)
 ```
 
-![](README_files/figure-markdown_github/plot_threshold-1.png)<!-- -->
+![](README_files/figure-markdown_github/BoringThreshold,%20plot_threshold-1.png)<!-- -->
 
 ``` r
 plot_threshold(diffnet, vertex.cex = "degree")
 ```
 
-![](README_files/figure-markdown_github/plot_threshold-2.png)<!-- -->
+![](README_files/figure-markdown_github/BoringThreshold,%20plot_threshold-2.png)<!-- -->
+
+Using more features
+
+``` r
+data("medInnovationsDiffNet")
+size <- sqrt(1 + dgr(medInnovationsDiffNet)[,1])
+set.seed(131)
+plot_threshold(
+  medInnovationsDiffNet,
+  vertex.label = nodes(medInnovationsDiffNet),
+  vertex.cex = size/10, vertex.lab.pos = NULL,
+  vertex.lab.cex = size/4,
+  vertex.sides = medInnovationsDiffNet[["city"]] + 2,
+  sub = "Note: Vertices' sizes and shapes given by degree and city respectively",
+  jitter.factor = c(1,1), jitter.amount = c(.25,.025)
+)
+```
+
+![](README_files/figure-markdown_github/NiceThreshold-1.png)<!-- -->
 
 ### Adoption rate
 
 ``` r
 plot_adopters(diffnet)
 ```
 
-![](README_files/figure-markdown_github/unnamed-chunk-2-1.png)<!-- -->
+![](README_files/figure-markdown_github/Adopters-1.png)<!-- -->
 
 ### Hazard rate
 
 ``` r
 hazard_rate(diffnet)
 ```
 
-![](README_files/figure-markdown_github/unnamed-chunk-3-1.png)<!-- -->
+![](README_files/figure-markdown_github/Hazard-1.png)<!-- -->
 
 ### Diffusion process
 

diff --git a/README_files/figure-markdown_github/Adopters-1.png b/README_files/figure-markdown_github/Adopters-1.png
diff --git a/README_files/figure-markdown_github/BoringThreshold, plot_threshold-1.png b/README_files/figure-markdown_github/BoringThreshold, plot_threshold-1.png
diff --git a/README_files/figure-markdown_github/BoringThreshold, plot_threshold-2.png b/README_files/figure-markdown_github/BoringThreshold, plot_threshold-2.png
diff --git a/README_files/figure-markdown_github/Hazard-1.png b/README_files/figure-markdown_github/Hazard-1.png
diff --git a/README_files/figure-markdown_github/NiceThreshold-1.png b/README_files/figure-markdown_github/NiceThreshold-1.png
diff --git a/README_files/figure-markdown_github/plot_diffnet-1.png b/README_files/figure-markdown_github/plot_diffnet-1.png
diff --git a/README_files/figure-markdown_github/plot_threshold-1.png b/README_files/figure-markdown_github/plot_threshold-1.png
diff --git a/README_files/figure-markdown_github/plot_threshold-2.png b/README_files/figure-markdown_github/plot_threshold-2.png
diff --git a/README_files/figure-markdown_github/unnamed-chunk-2-1.png b/README_files/figure-markdown_github/unnamed-chunk-2-1.png
diff --git a/README_files/figure-markdown_github/unnamed-chunk-3-1.png b/README_files/figure-markdown_github/unnamed-chunk-3-1.png