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walkercreek 2.0.0
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@tives82 tives82 released this 15 Mar 20:23
· 5 commits to master since this release
v.2.0.0
4cceb7e
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Learn about vigilant mode.

Added:

  • Nextclade Modules Update:
    Updated Nextclade modules to Nextclade version 3.0 to leverage the latest enhancements and bug fixes.

  • Added IRMA_SEGMENT_COVERAGE module that calculates reference length, sequence length, and percent coverage for each segment for a given sample.

  • Added MERGE_COVERAGE_RESULTS module that aggregates coverage data across all samples into merged_coverage_results.tsv file.

  • Added SAMTOOLS_MAPPED_READS module that calculates the number of reads mapped and mean depth for each segment for a given sample.

  • Added MERGE_BAM_RESULTS module that aggregates depth analysis data across all samples into merged_bam_results.tsv file.

  • Added MERGE_BAM_COVERAGE_RESULTS module that compiles a comprehensive report from the merged_bam_results.tsv and merged_coverage_results.tsv files.

Fixed:

Configuration Fixes:
Corrected the manifest version within nextflow.config to resolve the "Wrong version printed at runtime" issue.

Additional Notes:
The documentation has been updated to reflect these changes.

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