quast works with just fasta files

UPHL-BioNGS · erinyoung · Jan 29, 2025 · Jan 8, 2025 · Jan 8, 2025 · Jan 8, 2025
commit 67f0f68244cb519f497a4d840249728cf0e256e1
diff --git a/subworkflows/local/quality_assessment.nf b/subworkflows/local/quality_assessment.nf
@@ -48,7 +48,7 @@ workflow QUALITY_ASSESSMENT {
     }
 
     // contigs
-    QUAST(ch_reads_contigs.filter{it[2]})
+    QUAST(ch_reads_contigs)
     ch_versions = ch_versions.mix(QUAST.out.versions.first())
 
     QUAST.out.collect