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Update 20240730 #356

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merged 2 commits into from
Jul 30, 2024
Merged

Update 20240730 #356

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7728574
Update nextflow.config to 3.15.24212
erinyoung Jul 30, 2024
9a629a1
Update freyja to 1.5.1-07_02_2024-01-27-2024-07-26
erinyoung Jul 30, 2024
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6 changes: 3 additions & 3 deletions modules/freyja.nf
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Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,7 @@ process freyja_variants {
label "process_medium"
//errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}
publishDir path: params.outdir, mode: 'copy', saveAs: { filename -> filename.equals('versions.yml') ? null : filename }
container 'staphb/freyja:1.5.1-07_02_2024-01-27-2024-07-23'
container 'staphb/freyja:1.5.1-07_02_2024-01-27-2024-07-26'

//#UPHLICA maxForks 10
//#UPHLICA pod annotation: 'scheduler.illumina.com/presetSize', value: 'standard-xlarge'
Expand Down Expand Up @@ -53,7 +53,7 @@ process freyja_demix {
label "process_medium"
//errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}
publishDir path: params.outdir, mode: 'copy', saveAs: { filename -> filename.equals('versions.yml') ? null : filename }
container 'staphb/freyja:1.5.1-07_02_2024-01-27-2024-07-23'
container 'staphb/freyja:1.5.1-07_02_2024-01-27-2024-07-26'


//#UPHLICA maxForks 10
Expand Down Expand Up @@ -105,7 +105,7 @@ process freyja_aggregate {
tag "Aggregating results from freyja"
label "process_single"
publishDir path: params.outdir, mode: 'copy', saveAs: { filename -> filename.equals('versions.yml') ? null : filename }
container 'staphb/freyja:1.5.1-07_02_2024-01-27-2024-07-23'
container 'staphb/freyja:1.5.1-07_02_2024-01-27-2024-07-26'

//#UPHLICA maxForks 10
//#UPHLICA errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}
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2 changes: 1 addition & 1 deletion nextflow.config
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Expand Up @@ -5,7 +5,7 @@ manifest {
name = 'Cecret'
author = 'Erin Young'
homePage = 'https://github.com/UPHL-BioNGS/Cecret'
version = 'v3.15.24205'
version = 'v3.15.24212'
defaultBranch = 'master'
recurseSubmodules = false
description = 'Reference-based consensus creation'
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