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Update to 3.10.20240103 #276

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merged 2 commits into from
Jan 4, 2024
Merged

Update to 3.10.20240103 #276

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8627b1a
Update nextflow.config
erinyoung Jan 3, 2024
b63fee8
Update freyja to 1.4.8-2024-01-02
erinyoung Jan 3, 2024
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8 changes: 4 additions & 4 deletions modules/freyja.nf
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Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,7 @@ process freyja_variants {
label "process_medium"
//errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}
publishDir "${params.outdir}", mode: 'copy'
container 'quay.io/uphl/freyja:1.4.8-2023-12-26'
container 'quay.io/uphl/freyja:1.4.8-2024-01-02'


//#UPHLICA maxForks 10
Expand Down Expand Up @@ -45,7 +45,7 @@ process freyja_demix {
label "process_medium"
//errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}
publishDir "${params.outdir}", mode: 'copy'
container 'quay.io/uphl/freyja:1.4.8-2023-12-26'
container 'quay.io/uphl/freyja:1.4.8-2024-01-02'


//#UPHLICA maxForks 10
Expand Down Expand Up @@ -87,7 +87,7 @@ process freyja_boot {
label "process_medium"
//errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}
publishDir "${params.outdir}", mode: 'copy'
container 'quay.io/uphl/freyja:1.4.8-2023-12-26'
container 'quay.io/uphl/freyja:1.4.8-2024-01-02'

//#UPHLICA maxForks 10
//#UPHLICA pod annotation: 'scheduler.illumina.com/presetSize', value: 'standard-xlarge'
Expand Down Expand Up @@ -126,7 +126,7 @@ process freyja_aggregate {
tag "Aggregating results from freyja"
label "process_single"
publishDir "${params.outdir}", mode: 'copy'
container 'quay.io/uphl/freyja:1.4.8-2023-12-26'
container 'quay.io/uphl/freyja:1.4.8-2024-01-02'

//#UPHLICA maxForks 10
//#UPHLICA errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}
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2 changes: 1 addition & 1 deletion nextflow.config
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Expand Up @@ -5,7 +5,7 @@ manifest {
name = 'Cecret'
author = 'Erin Young'
homePage = 'https://github.com/UPHL-BioNGS/Cecret'
version = 'v3.10.20231226'
version = 'v3.10.20240103'
defaultBranch = 'master'
recurseSubmodules = false
description = 'Reference-based consensus creation'
Expand Down