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added info about freyja time length #214

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Aug 15, 2023
Merged

added info about freyja time length #214

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8 changes: 8 additions & 0 deletions README.md
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Expand Up @@ -1000,3 +1000,11 @@ Personally, we liked having `stderr` saved to a file because some of the tools u
- https://github.com/chrisruis/bammix
- https://github.com/lenaschimmel/sc2rf
- masking options for phylogenetic relatedness

### What processes take the longest?

Bedtools multicov was replaced by ACI due to processing times, but there are other processes that take longer.

Right now, the processes that take the most time are
- ivar trim
- freyja
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