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Merge pull request #252 from UPHL-BioNGS/update-20231107
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Update 20231107
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erinyoung authored Nov 7, 2023
2 parents 8b0c244 + 9dfbada commit f7354e3
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Showing 2 changed files with 5 additions and 5 deletions.
8 changes: 4 additions & 4 deletions modules/freyja.nf
Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,7 @@ process freyja_variants {
label "process_medium"
//errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}
publishDir "${params.outdir}", mode: 'copy'
container 'quay.io/uphl/freyja:1.4.7-2023-10-31'
container 'quay.io/uphl/freyja:1.4.7-2023-11-07'

//#UPHLICA maxForks 10
//#UPHLICA pod annotation: 'scheduler.illumina.com/presetSize', value: 'standard-xlarge'
Expand Down Expand Up @@ -44,7 +44,7 @@ process freyja_demix {
label "process_medium"
//errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}
publishDir "${params.outdir}", mode: 'copy'
container 'quay.io/uphl/freyja:1.4.7-2023-10-31'
container 'quay.io/uphl/freyja:1.4.7-2023-11-07'

//#UPHLICA maxForks 10
//#UPHLICA pod annotation: 'scheduler.illumina.com/presetSize', value: 'standard-xlarge'
Expand Down Expand Up @@ -85,7 +85,7 @@ process freyja_boot {
label "process_medium"
//errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}
publishDir "${params.outdir}", mode: 'copy'
container 'quay.io/uphl/freyja:1.4.7-2023-10-31'
container 'quay.io/uphl/freyja:1.4.7-2023-11-07'

//#UPHLICA maxForks 10
//#UPHLICA pod annotation: 'scheduler.illumina.com/presetSize', value: 'standard-xlarge'
Expand Down Expand Up @@ -124,7 +124,7 @@ process freyja_aggregate {
tag "Aggregating results from freyja"
label "process_single"
publishDir "${params.outdir}", mode: 'copy'
container 'quay.io/uphl/freyja:1.4.7-2023-10-31'
container 'quay.io/uphl/freyja:1.4.7-2023-11-07'

//#UPHLICA maxForks 10
//#UPHLICA errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}
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2 changes: 1 addition & 1 deletion nextflow.config
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@ manifest {
name = 'Cecret'
author = 'Erin Young'
homePage = 'https://github.com/UPHL-BioNGS/Cecret'
version = 'v3.9.20231102'
version = 'v3.9.20231107'
defaultBranch = 'master'
recurseSubmodules = false
description = 'Reference-based consensus creation'
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