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Merge pull request #329 from UPHL-BioNGS/2024-05-14
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update 2024-05-14
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erinyoung authored May 14, 2024
2 parents 1085ae6 + a3ace71 commit a3b709b
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Showing 2 changed files with 4 additions and 4 deletions.
6 changes: 3 additions & 3 deletions modules/freyja.nf
Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,7 @@ process freyja_variants {
label "process_medium"
//errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}
publishDir path: params.outdir, mode: 'copy', saveAs: { filename -> filename.equals('versions.yml') ? null : filename }
container 'staphb/freyja:1.5.0-04_30_2024-01-10-2024-04-30'
container 'staphb/freyja:1.5.0-05_11_2024-01-10-2024-05-14'

//#UPHLICA maxForks 10
//#UPHLICA pod annotation: 'scheduler.illumina.com/presetSize', value: 'standard-xlarge'
Expand Down Expand Up @@ -53,7 +53,7 @@ process freyja_demix {
label "process_medium"
//errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}
publishDir path: params.outdir, mode: 'copy', saveAs: { filename -> filename.equals('versions.yml') ? null : filename }
container 'staphb/freyja:1.5.0-04_30_2024-01-10-2024-04-30'
container 'staphb/freyja:1.5.0-05_11_2024-01-10-2024-05-14'


//#UPHLICA maxForks 10
Expand Down Expand Up @@ -105,7 +105,7 @@ process freyja_aggregate {
tag "Aggregating results from freyja"
label "process_single"
publishDir path: params.outdir, mode: 'copy', saveAs: { filename -> filename.equals('versions.yml') ? null : filename }
container 'staphb/freyja:1.5.0-04_30_2024-01-10-2024-04-30'
container 'staphb/freyja:1.5.0-05_11_2024-01-10-2024-05-14'

//#UPHLICA maxForks 10
//#UPHLICA errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}
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2 changes: 1 addition & 1 deletion nextflow.config
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@ manifest {
name = 'Cecret'
author = 'Erin Young'
homePage = 'https://github.com/UPHL-BioNGS/Cecret'
version = 'v3.13.20240507'
version = 'v3.13.20240514'
defaultBranch = 'master'
recurseSubmodules = false
description = 'Reference-based consensus creation'
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