Merge pull request #243 from UPHL-BioNGS/update-20231024

Update 20231024
UPHL-BioNGS · Oct 24, 2023 · 6329757 · 6329757
2 parents 10c95b9 + fdb4841
commit 6329757
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Showing 3 changed files with 5 additions and 5 deletions.
diff --git a/modules/artic.nf b/modules/artic.nf
@@ -2,7 +2,7 @@ process artic {
     tag        "${sample}"
     label      "process_high"
     publishDir "${params.outdir}", mode: 'copy'
-    container  'quay.io/uphl/artic:1.2.4-1.9.4-1'
+    container  'quay.io/uphl/artic:1.2.4-1.11.1'
 
     //#UPHLICA maxForks      10
     //#UPHLICA errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}
@@ -61,7 +61,7 @@ process artic {
 process artic_read_filtering {
     tag        "${sample}"
     publishDir "${params.outdir}", mode: 'copy'
-    container  'quay.io/uphl/artic:1.2.4-1.9.4-1'
+    container  'quay.io/uphl/artic:1.2.4-1.11.1'
     label      "process_single"
 
     //#UPHLICA maxForks      10

diff --git a/modules/freyja.nf b/modules/freyja.nf
@@ -3,7 +3,7 @@ process freyja {
   label         "process_medium"
   errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}
   publishDir    "${params.outdir}", mode: 'copy'
-  container     'quay.io/uphl/freyja:1.4.7-2023-10-17'
+  container     'quay.io/uphl/freyja:1.4.7-2023-10-24'
 
   //#UPHLICA maxForks 10
   //#UPHLICA pod annotation: 'scheduler.illumina.com/presetSize', value: 'standard-xlarge'
@@ -57,7 +57,7 @@ process freyja_aggregate {
   tag        "Aggregating results from freyja"
   label      "process_single"
   publishDir "${params.outdir}", mode: 'copy'
-  container  'quay.io/uphl/freyja:1.4.7-2023-10-17'
+  container  'quay.io/uphl/freyja:1.4.7-2023-10-24'
 
   //#UPHLICA maxForks 10
   //#UPHLICA errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}

diff --git a/nextflow.config b/nextflow.config
@@ -5,7 +5,7 @@ manifest {
   name              = 'Cecret'
   author            = 'Erin Young'
   homePage          = 'https://github.com/UPHL-BioNGS/Cecret'
-  version           = 'v3.8.20231017'
+  version           = 'v3.8.20231024'
   defaultBranch     = 'master'
   recurseSubmodules = false
   description       = 'Reference-based consensus creation'