Merge pull request #358 from UPHL-BioNGS/20240806

Update Pangolin and Freyja
UPHL-BioNGS · Aug 6, 2024 · 4f135ef · 4f135ef
2 parents 8a10814 + 26ae41d
commit 4f135ef
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Showing 3 changed files with 3 additions and 3 deletions.
diff --git a/modules/freyja.nf b/modules/freyja.nf
@@ -3,7 +3,7 @@ process freyja_variants {
   label         "process_medium"
   //errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}
   publishDir    path: params.outdir, mode: 'copy', saveAs: { filename -> filename.equals('versions.yml') ? null : filename }
-  container     'staphb/freyja:1.5.1-07_02_2024-01-27-2024-07-26'
+  container     'staphb/freyja:1.5.1-07_02_2024-01-27-2024-08-01'
 
   //#UPHLICA maxForks 10
   //#UPHLICA pod annotation: 'scheduler.illumina.com/presetSize', value: 'standard-xlarge'

diff --git a/modules/pangolin.nf b/modules/pangolin.nf
@@ -2,7 +2,7 @@ process pangolin {
   tag        "SARS-CoV-2 lineage Determination"
   label      "process_medium"
   publishDir path: params.outdir, mode: 'copy', saveAs: { filename -> filename.equals('versions.yml') ? null : filename }
-  container  'staphb/pangolin:4.3.1-pdata-1.28.1'
+  container  'staphb/pangolin:4.3.1-pdata-1.29'
 
   //#UPHLICA maxForks      10
   //#UPHLICA errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}

diff --git a/nextflow.config b/nextflow.config
@@ -5,7 +5,7 @@ manifest {
   name              = 'Cecret'
   author            = 'Erin Young'
   homePage          = 'https://github.com/UPHL-BioNGS/Cecret'
-  version           = 'v3.15.24212'
+  version           = 'v3.15.24219'
   defaultBranch     = 'master'
   recurseSubmodules = false
   description       = 'Reference-based consensus creation'