Merge pull request #214 from UPHL-BioNGS/update_20230815

added info about freyja time length
UPHL-BioNGS · Aug 15, 2023 · 140155a · 140155a
2 parents 8885632 + c1acd63
commit 140155a
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diff --git a/README.md b/README.md
@@ -1000,3 +1000,11 @@ Personally, we liked having `stderr` saved to a file because some of the tools u
 - https://github.com/chrisruis/bammix
 - https://github.com/lenaschimmel/sc2rf
 - masking options for phylogenetic relatedness
+
+### What processes take the longest?
+
+Bedtools multicov was replaced by ACI due to processing times, but there are other processes that take longer.
+
+Right now, the processes that take the most time are
+- ivar trim
+- freyja