update nextclade dataset #101
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| name: update nextclade dataset | |
| on: | |
| workflow_dispatch: | |
| schedule: | |
| - cron: '30 4 * * TUE' | |
| jobs: | |
| update-nextclade-dataset: | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@master | |
| - name: download nextclade | |
| run: | | |
| wget -q https://github.com/nextstrain/nextclade/releases/latest/download/nextclade-x86_64-unknown-linux-gnu -O nextclade | |
| chmod +x nextclade | |
| ./nextclade --version | |
| ./nextclade dataset get --name sars-cov-2 --output-zip sars.zip | |
| mv sars.zip ./data/sars.zip | |
| rm -rf nextclade | |
| - name: Create Pull Request | |
| uses: peter-evans/create-pull-request@v5 | |
| with: | |
| commit-message: Update nextclade dataset | |
| title: Update dataset | |
| body: | | |
| - Dependency updates | |
| Auto-generated by [create-pull-request][1] | |
| [1]: https://github.com/peter-evans/create-pull-request | |
| branch: update-dataset |