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Mdr t1 molli#228

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plaresmedima wants to merge 33 commits intoUKRIN-MAPS:devUKRIN-MAPS/ukat:devfrom plaresmedima:mdr_t1_molliplaresmedima/ukat:mdr_t1_molliCopy head branch name to clipboard

+675-113

Commits

Commits on Oct 1, 2024

• Added .venv to gitignore

  plaresmedima

  committed
  62d5e74

• Add mdreg to requirements

  plaresmedima

  committed
  8ea0c18

• Add mdr keyword to T1() class

  plaresmedima

  committed
  e8a27ed

• Added script to run mdreg examples

  Show description for dbfd7bd
  plaresmedima

  committed
  dbfd7bd

• autocorrect PEP8 violations

  plaresmedima

  committed
  1b392c0

Commits on Oct 2, 2024

• Merge branch 'dev' into mdr_t1_molli

  alexdaniel654

  committed
  89051a5

Commits on Nov 8, 2024

• Handled molli option

  Show description for ce14693
  plaresmedima

  committed
  ce14693

Commits on Nov 14, 2024

• Merge remote-tracking branch 'upstream/dev' into mdr_t1_molli

  alexdaniel654

  committed
  201ff36

• Little bit of moving stuff around to keep things together

  alexdaniel654

  committed
  d802356

• Drop support for Python 3.8

  Show description for f5be975
  alexdaniel654

  committed
  f5be975

• Drop 3.12 from test matrix

  alexdaniel654

  committed
  5faf6f1

Commits on Nov 15, 2024

• Added explicit t1 model selection to MDR

  Show description for b3a876f
  alexdaniel654

  committed
  b3a876f

• Added deformation field to to_nifti method

  alexdaniel654

  committed
  4b073e5

Commits on Dec 2, 2024

• force mdreg to be done slice by slice

  plaresmedima

  committed
  414c144

Commits on Dec 9, 2024

• pep8

  alexdaniel654

  committed
  bcd3fdb

Commits on Dec 18, 2024

• Added get_pixel_array method to get scaled and registered arrays

  Show description for af9716c
  alexdaniel654

  committed
  af9716c

• mdreg helper function now outputs pars

  Show description for 1443587
  alexdaniel654

  committed
  1443587

• Moved iteration over slices into ukat if tss!=0

  Show description for ab8e539
  alexdaniel654

  committed
  ab8e539

• Fix a minor bug with setup noticed when making new envs to test mdr

  alexdaniel654

  committed
  00be404

• Added mdreg version requirement

  alexdaniel654

  committed
  c9903e3

• Added some mdr tests

  alexdaniel654

  committed
  f765292

• magnitude correct now cant output nan

  Show description for 16d835c
  alexdaniel654

  committed
  16d835c

• pep8 fixes

  alexdaniel654

  committed
  985d69a

• Should now hit tss_axis error

  alexdaniel654

  committed
  6b1567b

• Added test for get_pixel_array

  alexdaniel654

  committed
  5a55086

Commits on Jan 2, 2025

• Changed MDR pass thresholds

  Show description for 40076be
  alexdaniel654

  committed
  40076be

• Turned off multithreading for mdr tests

  Show description for 2c16bc1
  alexdaniel654

  committed
  2c16bc1

• Trying with older version of itk

  Show description for 86fefff
  alexdaniel654

  committed
  86fefff

• Old version of itk fixes windows but breaks mac. Trying latest alpha

  Show description for bb58036
  alexdaniel654

  committed
  bb58036

• OS Specific itk requirements

  alexdaniel654

  committed
  bacd8b1

Commits on Jan 3, 2025

• Changed platform syntax

  alexdaniel654

  committed
  b12399a

• Added error for if mask is specified with MDR

  Show description for 25054f1
  alexdaniel654

  committed
  25054f1

• Added MDR to t1 tutorial

  alexdaniel654

  committed
  df0389d