Updated workflow summary graph formatting

Tuks-ICMM · Oct 25, 2024 · 388bf70 · 388bf70
1 parent a677cff
commit 388bf70
Showing 1 changed file with 20 additions and 19 deletions.
diff --git a/docs/02-workflow/02-analysis.md b/docs/02-workflow/02-analysis.md
@@ -32,31 +32,32 @@ Reference Genome Configuration
   <summary>Rule Map/Diagram</summary>
 
 ```mermaid
-  flowchart TB
-    classDef bcftools stroke:#FF5733,fill:#D3D3D3,stroke-width:4px,color:black;
-    classDef plink stroke:#36454F,fill:#D3D3D3,stroke-width:4px,color:black;
-    classDef python stroke:#FEBE10,fill:#D3D3D3,stroke-width:4px,color:black;
-    classDef admixture stroke:#333,fill:#D3D3D3,stroke-width:4px,color:black;
-    classDef tabix stroke:#023020,fill:#D3D3D3,stroke-width:4px,color:black;
-    classDef gatk stroke:#007FFF,fill:#D3D3D3,stroke-width:4px,color:black;
-    START(((Input)))
-    END(((Output)))
+flowchart TB
+  classDef bcftools stroke:#FF5733,fill:#D3D3D3,stroke-width:4px,color:black;
+  classDef plink stroke:#36454F,fill:#D3D3D3,stroke-width:4px,color:black;
+  classDef python stroke:#FEBE10,fill:#D3D3D3,stroke-width:4px,color:black;
+  classDef admixture stroke:#333,fill:#D3D3D3,stroke-width:4px,color:black;
+  classDef tabix stroke:#023020,fill:#D3D3D3,stroke-width:4px,color:black;
+  classDef gatk stroke:#007FFF,fill:#D3D3D3,stroke-width:4px,color:black;
+  START(((Input)))
+  END(((Output)))
 
-    extract_provided_region[[**extract_provided_region**: Extract the provided region coordinates for clustering]]
+  extract_provided_region[[**extract_provided_region**: Extract the provided region coordinates for clustering]]
 
-    remove_rare_variants[[**remove_rare_variants**: Remove all variants which are not good indicators of population structure by nature]]
+  remove_rare_variants[[**remove_rare_variants**: Remove all variants which are not good indicators of population structure by nature]]
 
-    plinkPca[[**Plink_PCA**:
+  plinkPca[[**Plink_PCA**:
 Perform a PLINK-2.0 PCA]]
-    
-    report_fixation_index_per_cluster[[**report_fixation_index_per_cluster**: Report Fixation-index for the provided clusters]]
+  
+  report_fixation_index_per_cluster[[**report_fixation_index_per_cluster**: Report Fixation-index for the provided clusters]]
 
-    class remove_rare_variants,plinkPca,plinkPed,report_fixation_index_per_cluster,extract_provided_region plink;
-    class Admixture admixture;
-    class fetchPedLables python;
+  class remove_rare_variants,plinkPca,plinkPed,report_fixation_index_per_cluster,extract_provided_region plink;
+  class Admixture admixture;
+  class fetchPedLables python;
 
-    START --> extract_provided_region --> remove_rare_variants --> plinkPca & report_fixation_index_per_cluster
+  START --> extract_provided_region --> remove_rare_variants --> plinkPca & report_fixation_index_per_cluster
 
-    plinkPca & report_fixation_index_per_cluster --> END
+  plinkPca & report_fixation_index_per_cluster --> END
 ```
+
 </details>