Debugging documentation site error

Tuks-ICMM · Oct 25, 2024 · 343edad · 343edad
1 parent 7f69b5f
commit 343edad
Showing 1 changed file with 29 additions and 27 deletions.
diff --git a/docs/02-workflow/02-analysis.md b/docs/02-workflow/02-analysis.md
@@ -28,7 +28,7 @@ Reference Genome Configuration
 
 ---
 
-<details>
+<details open>
   <summary>Rule Map/Diagram</summary>
 
 
@@ -37,32 +37,34 @@ Reference Genome Configuration
 title: Population Structure Workflow
 ---
 flowchart TB
-
-  classDef bcftools stroke:#FF5733,fill:#D3D3D3,stroke-width:4px,color:black;
-  classDef plink stroke:#36454F,fill:#D3D3D3,stroke-width:4px,color:black;
-  classDef python stroke:#FEBE10,fill:#D3D3D3,stroke-width:4px,color:black;
-  classDef admixture stroke:#333,fill:#D3D3D3,stroke-width:4px,color:black;
-  classDef tabix stroke:#023020,fill:#D3D3D3,stroke-width:4px,color:black;
-  classDef gatk stroke:#007FFF,fill:#D3D3D3,stroke-width:4px,color:black;
-  START(((Input)))
-  END(((Output)))
-
-  extract_provided_region[[**extract_provided_region**: Extract the provided region coordinates for clustering]]
-
-  remove_rare_variants[[**remove_rare_variants**: Remove all variants which are not good indicators of population structure by nature]]
-
-  plinkPca[[**Plink_PCA**:
-Perform a PLINK-2.0 PCA]]
-  
-  report_fixation_index_per_cluster[[**report_fixation_index_per_cluster**: Report Fixation-index for the provided clusters]]
-
-  class remove_rare_variants,plinkPca,plinkPed,report_fixation_index_per_cluster,extract_provided_region plink;
-  class Admixture admixture;
-  class fetchPedLables python;
-
-  START --> extract_provided_region --> remove_rare_variants --> plinkPca & report_fixation_index_per_cluster
-
-  plinkPca & report_fixation_index_per_cluster --> END
+  subgraph population_structure_workflow[Population Structure Workflow]
+    direction TB
+    classDef bcftools stroke:#FF5733,fill:#D3D3D3,stroke-width:4px,color:black;
+    classDef plink stroke:#36454F,fill:#D3D3D3,stroke-width:4px,color:black;
+    classDef python stroke:#FEBE10,fill:#D3D3D3,stroke-width:4px,color:black;
+    classDef admixture stroke:#333,fill:#D3D3D3,stroke-width:4px,color:black;
+    classDef tabix stroke:#023020,fill:#D3D3D3,stroke-width:4px,color:black;
+    classDef gatk stroke:#007FFF,fill:#D3D3D3,stroke-width:4px,color:black;
+    START(((Input)))
+    END(((Output)))
+
+    extract_provided_region[[**extract_provided_region**: Extract the provided region coordinates for clustering]]
+
+    remove_rare_variants[[**remove_rare_variants**: Remove all variants which are not good indicators of population structure by nature]]
+
+    plinkPca[[**Plink_PCA**:
+  Perform a PLINK-2.0 PCA]]
+    
+    report_fixation_index_per_cluster[[**report_fixation_index_per_cluster**: Report Fixation-index for the provided clusters]]
+
+    class remove_rare_variants,plinkPca,plinkPed,report_fixation_index_per_cluster,extract_provided_region plink;
+    class Admixture admixture;
+    class fetchPedLables python;
+
+    START --> extract_provided_region --> remove_rare_variants --> plinkPca & report_fixation_index_per_cluster
+
+    plinkPca & report_fixation_index_per_cluster --> END
+  end
   ```