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Cleaned up files and updated file-structure documentation page #12

Cleaned up files and updated file-structure documentation page

Cleaned up files and updated file-structure documentation page #12

name: Snakemake Unit Tests
on:
push:
branches:
- main
paths-ignore:
- "docs/**"
jobs:
lint:
runs-on: ubuntu-latest
strategy:
matrix:
python-version: ["3.8", "3.9", "3.10"]
steps:
- uses: actions/checkout@v3
- uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- name: Dry Run
uses: snakemake/[email protected]
with:
directory: "."
task: "run"
snakefile: "workflow/Snakefile"
stagein: "pip install -r requirements.txt"
args: "--dry-run"
# Deactivated testing in light of https://github.com/snakemake/snakemake-github-action/issues/18
# - name: Testing
# uses: snakemake/[email protected]
# with:
# directory: ".test"
# snakefile: "workflow/Snakefile"
# args: "--cores 1 --use-conda --conda-cleanup-pkgs cache"
# stagein: "" # additional preliminary commands to run (can be multiline)