Cleaned up files and updated file-structure documentation page #12
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name: Snakemake Unit Tests | |
on: | |
push: | |
branches: | |
- main | |
paths-ignore: | |
- "docs/**" | |
jobs: | |
lint: | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
python-version: ["3.8", "3.9", "3.10"] | |
steps: | |
- uses: actions/checkout@v3 | |
- uses: actions/setup-python@v4 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Dry Run | |
uses: snakemake/[email protected] | |
with: | |
directory: "." | |
task: "run" | |
snakefile: "workflow/Snakefile" | |
stagein: "pip install -r requirements.txt" | |
args: "--dry-run" | |
# Deactivated testing in light of https://github.com/snakemake/snakemake-github-action/issues/18 | |
# - name: Testing | |
# uses: snakemake/[email protected] | |
# with: | |
# directory: ".test" | |
# snakefile: "workflow/Snakefile" | |
# args: "--cores 1 --use-conda --conda-cleanup-pkgs cache" | |
# stagein: "" # additional preliminary commands to run (can be multiline) |