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update docs ci

update docs ci #93

name: Python Package using Conda
on:
push:
branches: [ devel ]
jobs:
build-linux:
strategy:
max-parallel: 5
matrix:
os: [ubuntu-latest, macos-latest]
python-version: ["3.9", "3.10", "3.11"]
runs-on: ${{matrix.os}}
steps:
- uses: actions/checkout@v3
with:
ref: devel
- name: Set up Python
uses: actions/setup-python@v3
with:
python-version: ${{matrix.python-version}}
- name: Add conda to system path
run: |
# $CONDA is an environment variable pointing to the root of the miniconda directory
echo $CONDA/bin >> $GITHUB_PATH
- name: Install dependencies
run: |
conda install numpy scipy h5py pyyaml pandas xarray
pip install .
test:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
with:
fetch-depth: 1
- name: Set up Python
uses: actions/setup-python@v3
with:
python-version: '3.11'
- name: Install dependencies
run: |
python -m pip install --upgrade pip
pip install .
pip install pytest pytest-cov
- name: test
run: |
cd test
pytest -v --cov=pytomoatt --cov-report=xml
- name: Upload to codecov
uses: codecov/codecov-action@v2
with:
token: ${{ secrets.CODECOV_TOKEN }}