version 2023.2

.Rbuildignore

@@ -1,4 +1,6 @@
 ^.*\.Rproj$
 ^\.Rproj\.user$
 ^data-raw$
-README.md
+README.md
+^\.git/$
+^.Rprofile$

.gitignore

@@ -4,3 +4,4 @@
 .Ruserdata
 # inst/doc
 .DS_Store
+.Rbuildignore

DESCRIPTION

@@ -1,7 +1,7 @@
 Package: msigdf
 Type: Package
 Title: MSigDB in a data frame
-Version: 7.4
+Version: 2023.2
 Authors@R: c(
     person("Stephen", "Turner", email = "[email protected]", role = "aut"),
     person("Toledo", "Enrique", email = "[email protected]", role = c("ctb","cre")))
@@ -10,7 +10,7 @@ URL: https://github.com/ToledoEM/msigdf
 License: CC0
 Encoding: UTF-8
 LazyData: true
-RoxygenNote: 7.1.1
+RoxygenNote: 7.3.1
 Depends: R (>= 3.1.2)
 Imports: tibble
 Suggests: knitr, plyr, tidyverse, rmarkdown, BiocStyle

R/data.R

@@ -17,11 +17,19 @@ NULL
 #' @format A data frame with 4 variables: \code{category_code}, \code{category_subcode}, \code{geneset} and \code{symbol}. See vignette for more details.
 "msigdf.mouse"
 
-#' Links to MSigDB website
+#' Links to MSigDB website human gene sets
 #'
 #' Data frame linking each gene set name to the MSigDB website
 #'
-#' @source \url{http://software.broadinstitute.org/gsea/msigdb/}
-#' @format A data frame with 3 variables: \code{collection}, \code{geneset}, and \code{url}. See vignette for more details.
+#' @source \url{https://www.gsea-msigdb.org/gsea/msigdb/mouse/geneset/}
+#' @format A data frame with 4 variables: \code{category_code}, \code{category_subcode}, \code{geneset}, and \code{url}. See vignette for more details.
 "msigdf.urls"
 
+#' Links to MSigDB website mouse gene sets
+#'
+#' Data frame linking each gene set name to the MSigDB website
+#'
+#' @source \url{https://www.gsea-msigdb.org/gsea/msigdb/mouse/geneset/}
+#' @format A data frame with 4 variables: \code{category_code}, \code{category_subcode}, \code{geneset}, and \code{url}. See vignette for more details.
+"msigdf.mouse.urls"
+

README.md

@@ -6,7 +6,7 @@ The [Molecular Signatures Database (MSigDB)](http://www.broad.mit.edu/gsea/msigd
 This is the updated version of the archived repo of [@stephenturner](https://github.com/stephenturner/msigdf/pull/1)   
 
 
-Current version: [v7.4](https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/MSigDB_v7.4_Release_Notes) (April 2021).
+Current version: [v2023.2.Hs](https://docs.gsea-msigdb.org/#MSigDB/Release_Notes/MSigDB_2023.2.Hs/) (Oct 2023).
 
 ## Installation
 
@@ -80,5 +80,6 @@ Code for building this data is in folder data-raw
 
 
 
+
 See the [package vignette](http://htmlpreview.github.io/?https://raw.githubusercontent.com/ToledoEM/msigdf/master/vignettes/msigdf.html) for more.   
 

data-raw/get_gmt.sh

@@ -1,38 +1,146 @@
 #!/bin/bash
+# DO NOT RUN
+# Example code
 
-if [ ! -d "gmt" ]; then
-	mkdir gmt
-fi
 
+<<<<<<< Updated upstream
+
+wget -P gmt/ https://www.gsea-msigdb.org/gsea/msigdb/download_file.jsp?filePath=/msigdb/release/2023.2.Mm/msigdb_v2023.2.Mm_files_to_download_locally.zip
+wget -P gmt/ https://www.gsea-msigdb.org/gsea/msigdb/download_file.jsp?filePath=/msigdb/release/2023.2.Hs/msigdb_v2023.2.Hs_files_to_download_locally.zip
+
+unzip *
+
+mv msigdb_v2023.2.Mm_files_to_download_locally/ mouse/
+mv msigdb_v2023.2.Hs_files_to_download_locally/ human/
+
+#
+#
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c1.all.v2022.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c2.cgp.v2022.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c2.cp.biocarta.v2022.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c2.cp.kegg.v2022.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c2.cp.pid.v2022.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c2.cp.wikipathways.v2022.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c3.all.v2022.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c3.mir.mir_legacy.v2022.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c3.mir.mirdb.v2022.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c3.mir.v2022.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c3.tft.gtrd.v2022.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c3.tft.tft_legacy.v2022.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c3.tft.v2022.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c4.all.v2022.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c4.cgn.v2022.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c4.cm.v2022.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c5.all.v2022.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c5.go.bp.v2022.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c5.go.cc.v2022.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c5.go.mf.v2022.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c5.go.v2022.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c5.hpo.v2022.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c6.all.v2022.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c7.all.v2022.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c7.immunesigdb.v2022.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c7.vax.v2022.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c8.all.v2022.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/h.all.v2022.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c2.all.v2022.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c2.cp.reactome.v2022.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c2.cp.v2022.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c1.all.v2023.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c2.all.v2023.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c2.cgp.v2023.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c2.cp.biocarta.v2023.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c2.cp.kegg.v2023.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c2.cp.pid.v2023.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c2.cp.reactome.v2023.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c2.cp.v2023.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c2.cp.wikipathways.v2023.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c3.all.v2023.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c3.mir.mir_legacy.v2023.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c3.mir.mirdb.v2023.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c3.mir.v2023.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c3.tft.gtrd.v2023.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c3.tft.tft_legacy.v2023.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c3.tft.v2023.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c4.all.v2023.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c4.cgn.v2023.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c4.cm.v2023.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c5.all.v2023.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c5.go.bp.v2023.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c5.go.cc.v2023.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c5.go.mf.v2023.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c5.go.v2023.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c5.hpo.v2023.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c6.all.v2023.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c7.all.v2023.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c7.immunesigdb.v2023.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c7.vax.v2023.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c8.all.v2023.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/h.all.v2023.1.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c1.all.v2023.2.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c2.all.v2023.2.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c2.cgp.v2023.2.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c2.cp.biocarta.v2023.2.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c2.cp.kegg_legacy.v2023.2.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c2.cp.kegg_medicus.v2023.2.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c2.cp.pid.v2023.2.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c2.cp.reactome.v2023.2.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c2.cp.v2023.2.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c2.cp.wikipathways.v2023.2.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c3.all.v2023.2.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c3.mir.mir_legacy.v2023.2.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c3.mir.mirdb.v2023.2.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c3.mir.v2023.2.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c3.tft.gtrd.v2023.2.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c3.tft.tft_legacy.v2023.2.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c3.tft.v2023.2.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c4.3ca.v2023.2.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c4.all.v2023.2.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c4.cgn.v2023.2.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c4.cm.v2023.2.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c5.all.v2023.2.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c5.go.bp.v2023.2.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c5.go.cc.v2023.2.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c5.go.mf.v2023.2.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c5.go.v2023.2.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c5.hpo.v2023.2.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c6.all.v2023.2.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c7.all.v2023.2.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c7.immunesigdb.v2023.2.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c7.vax.v2023.2.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c8.all.v2023.2.Hs.symbols.gmt
+# ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/h.all.v2023.2.Hs.symbols.gmt
+
+
+=======
+#if [ ! -d "gmt" ]; then
+#	mkdir gmt
+#fi
 
 wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c1.all.v7.4.symbols.gmt
-#wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c2.all.v7.4.symbols.gmt
-wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c2.cgp.v7.4.symbols.gmt
-wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c2.cp.biocarta.v7.4.symbols.gmt
-wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c2.cp.kegg.v7.4.symbols.gmt
-wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c2.cp.pid.v7.4.symbols.gmt
+wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c2.cp.v7.4.symbols.gmt
 wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c2.cp.reactome.v7.4.symbols.gmt
-#wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c2.cp.v7.4.symbols.gmt
-wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c2.cp.wikipathways.v7.4.symbols.gmt
-#wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c3.all.v7.4.symbols.gmt
-wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c3.mir.mir_legacy.v7.4.symbols.gmt
-wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c3.mir.mirdb.v7.4.symbols.gmt
-#wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c3.mir.v7.4.symbols.gmt
-wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c3.tft.gtrd.v7.4.symbols.gmt
-wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c3.tft.tft_legacy.v7.4.symbols.gmt
-#wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c3.tft.v7.4.symbols.gmt
-#wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c4.all.v7.4.symbols.gmt
-wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c4.cgn.v7.4.symbols.gmt
+wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c2.cp.pid.v7.4.symbols.gmt
+wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c2.cp.kegg.v7.4.symbols.gmt
+wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c2.cp.biocarta.v7.4.symbols.gmt
+wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c2.cgp.v7.4.symbols.gmt
+wget -p gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c2.cp.wikipathways.v7.4.symbols.gmt
+
+wget -p gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c3.mir.v7.4.symbols.gmt
+wget -p gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c3.mir.mirdb.v7.4.symbols.gmt
+wget -p gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c3.tft.gtrd.v7.4.symbols.gmt
+wget -p gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c3.tft.v7.4.symbols.gmt
 wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c4.cm.v7.4.symbols.gmt
-#wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c5.all.v7.4.symbols.gmt
-wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c5.go.bp.v7.4.symbols.gmt
-wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c5.go.cc.v7.4.symbols.gmt
-wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c5.go.mf.v7.4.symbols.gmt
-#wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c5.go.v7.4.symbols.gmt
-wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c5.hpo.v7.4.symbols.gmt
+wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c4.cgn.v7.4.symbols.gmt
+
+wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c5.mf.v7.4.symbols.gmt
+wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c5.cc.v7.4.symbols.gmt
+wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c5.bp.v7.4.symbols.gmt
+wget -p gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c5.hpo.v7.4.symbols.gmt
+
 wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c6.all.v7.4.symbols.gmt
-#wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c7.all.v7.4.symbols.gmt
-wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c7.immunesigdb.v7.4.symbols.gmt
-wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c7.vax.v7.4.symbols.gmt
-wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c8.all.v7.4.symbols.gmt
-wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/h.all.v7.4.symbols.gmt
+wget -P gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c7.all.v7.4.symbols.gmt
+wget -p gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/c8.all.v7.4.symbols.gmt
+
+wget -p gmt/ ftp://ftp.broadinstitute.org/distribution/gsea/gene_sets/h.all.v7.4.symbols.gmt
+>>>>>>> Stashed changes